Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00056 ATGTGCCTCAAAGAACTCACAAAAATCATGAAGTTTCGCAAAGCATATTATGATGTAGTTCTTCCCATATTCTGTGAAGTGAGTCGGTCTCAAGTTCGTAATCAAGAATTTAGTTTTGGAGAAGCACTTCAAGGTACTGACGGTGAAGTATCAAGCTGGAGGAGAGCTCTCAGAGAAGCTGGAGGCAATTATGGGTTTGATGTGCCTAATCTCGAGTCCAACACTCAAAGAGAGGAGATTATTGACCATATTATCCATCGTGTTCGTGAAATATTGGCCCCGCCCATGTGTAGTGCAGAGAACACCGTTGGAGTGGATTCTCGTGTCCAGGATGTGATTACAATGCTTCATAATCATAAATCAAAACACGTTATCATGGTAGGGATATGTGGAATTGCGGGTATAGGCAAAACTATTGTTGCCAAAGCCATATTTGAGCACATCCACTGGGAATTTGAGGACATGTGTTATTTGGGTTTTGACGGGGAAGATTGGCAGAGGGAAAAAGTCGACCTTGTTTCAAGGTTACGTACGCAAATAGGAAGCCTCATGTTGAAGCATAAGAAGGTACTTCTTGTGCTTGACGATGTGAATCAGTTGGAGCAACTGAATACTTTATGTGGGAGTCGTGATCACTTCGGTGAAGGGAGTATAATAATCATTACAACTAGAGATTTATCACTTCTTAATGCCTTTCAAGTGGATGACACATATCACATGCAACTTTTGAGCGACCAAGAGTCTCTTCAACTTCTCATTTGGCAAGCATTTGGACAACCATACCCTATAGAAGAATTCATGGGTGCTTGCAAAGAAGTGGTTGCTTATGCTGAAGGGCTGCCACTAGCTCTTAAAGTCCTTGGTTGTACGTTGCGTAGTCAGCCATTGCAAGAGTGGAGTGCGATGCTCCAGAAGCTGAGCCGACTTCAATATTTTGGCATATCCAACATTCTAAAGCTTAGCCTCGCCTCTTTAAGTAAGGAACAAAGAGAAATATTTCTAAATATAGTTGAATTCTATATTGGGGAGGACTTGAATGATGTGATCCAAGAGTTGAAAGGCAATGAATTCTATGCTCACATTGACATAGAAATCCTACAGGATCGAGGCCTTATAACCATTGACGACAACAAACTTAGAATGCATAATCTGTTGCAACTCATGGGAAGCAAAATAATACATGAAACGGTACTCACAGAGTTACAAATTCGAGGTTATAGGTATGAGGTGTTCTTGAGTTTTAGAGGTGACACTCGGAAGAATTTTACTTCACACCTCTATGCGGCTCTATGTAATGCTGGCATAACTGTTTTTAAAGATGATGTTGAGCTTCCCAGAGGAAAGTATATCAACACAGAACTCTTGCAGGCAATTGGAAGTTCAAAAATCTCAATCATCATCTTTTCTAGTGAATATGCTGGATCTAAATGGTGTTTGAAGGAATTGTCAATGATCATGCGGCTTCGTAAATCGGAGGGTCGGGTGGTTCTACCTGTGTTTTACCATGTTGATCCATCAGAAATTCGTCATCAAACTTCCAATTTTGGAAAAGCATTCGAAGATTTTATACGAAAAAGTTTCCAATCAAAACCTCAAGTTTCGGAGTGGAGGGAAACCCTTACTAAAGCTGGGAGCCTTGCAGGAACCGTTGTACTTAGTGCCGGGGACGAGAGTGATTATGTTGACGATATTGTTAGGCAAGTTTGTGATATATTGTGCAAGACTGACTTATTTGTGGCTGAGCACCCAGTAGGAGTCGATAGTCGCGTGCGTGAAGTGATCACAATGCTCCAAAACCATTCATCTGGAAATACTGTCACAATAGGGATATGGGGAATGGGGGGCGCCGGCAAAACAACTATTGCCAAAGCCATTTACAATGAAATTGGTCGCACTTTTAAGAGTAGAAGTTACCTTTCAAATATCAGAAAAGAATAA 1938 0.4112 MCLKELTKIMKFRKAYYDVVLPIFCEVSRSQVRNQEFSFGEALQGTDGEVSSWRRALREAGGNYGFDVPNLESNTQREEIIDHIIHRVREILAPPMCSAENTVGVDSRVQDVITMLHNHKSKHVIMVGICGIAGIGKTIVAKAIFEHIHWEFEDMCYLGFDGEDWQREKVDLVSRLRTQIGSLMLKHKKVLLVLDDVNQLEQLNTLCGSRDHFGEGSIIIITTRDLSLLNAFQVDDTYHMQLLSDQESLQLLIWQAFGQPYPIEEFMGACKEVVAYAEGLPLALKVLGCTLRSQPLQEWSAMLQKLSRLQYFGISNILKLSLASLSKEQREIFLNIVEFYIGEDLNDVIQELKGNEFYAHIDIEILQDRGLITIDDNKLRMHNLLQLMGSKIIHETVLTELQIRGYRYEVFLSFRGDTRKNFTSHLYAALCNAGITVFKDDVELPRGKYINTELLQAIGSSKISIIIFSSEYAGSKWCLKELSMIMRLRKSEGRVVLPVFYHVDPSEIRHQTSNFGKAFEDFIRKSFQSKPQVSEWRETLTKAGSLAGTVVLSAGDESDYVDDIVRQVCDILCKTDLFVAEHPVGVDSRVREVITMLQNHSSGNTVTIGIWGMGGAGKTTIAKAIYNEIGRTFKSRSYLSNIRKE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00056 645 Gene3D - 574 645 IPR027417 -
Pral4093g00056 645 Gene3D - 91 237 IPR027417 -
Pral4093g00056 645 Gene3D - 405 573 IPR035897 -
Pral4093g00056 645 ProSiteProfiles TIR domain profile. 1 92 IPR000157 GO:0007165
Pral4093g00056 645 SMART till_3 407 546 IPR000157 GO:0007165
Pral4093g00056 645 ProSiteProfiles TIR domain profile. 406 572 IPR000157 GO:0007165
Pral4093g00056 645 Gene3D - 242 326 IPR042197 -
Pral4093g00056 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 335 IPR027417 -
Pral4093g00056 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 642 IPR027417 -
Pral4093g00056 645 SUPERFAMILY Toll/Interleukin receptor TIR domain 400 548 IPR035897 -
Pral4093g00056 645 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 394 IPR044974 GO:0006952
Pral4093g00056 645 Gene3D - 1 90 IPR035897 -
Pral4093g00056 645 PRINTS Disease resistance protein signature 126 141 - -
Pral4093g00056 645 PRINTS Disease resistance protein signature 277 291 - -
Pral4093g00056 645 PRINTS Disease resistance protein signature 184 198 - -
Pral4093g00056 645 Pfam NB-ARC domain 588 636 IPR002182 GO:0043531
Pral4093g00056 645 Pfam NB-ARC domain 173 311 IPR002182 GO:0043531
Pral4093g00056 645 FunFam Disease resistance protein (TIR-NBS-LRR class) 404 574 - -
Pral4093g00056 645 SUPERFAMILY "Winged helix" DNA-binding domain 314 395 IPR036390 -
Pral4093g00056 645 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 64 IPR035897 -
Pral4093g00056 645 Pfam TIR domain 408 568 IPR000157 GO:0007165
Pral4093g00056 645 Pfam TIR domain 2 97 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00056 Pral-Chr4093 1118399 1122159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00056 103 404 WRKY Transcription Factor Family AT5G45050 32.622 6.70e-37 146