Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00045 ATGAATCCGTCTCAGAGTCTCATGCAGAAGCCTTCTCGGACTCTTCCGAATCAAAGAGCTTCCTGGAACGATATCTTCCAGCTTCCTGATCGGAGCTGCGAGGCGAGAACGTTGCTTCGGGGAGTGGATGTAAATTTGGCGCCGCCGTCAACGGTTGTGGACTGTGACGACGAAAATGGCGTCTCCTCACCGAACAGTACTGTGTCGAGCATCAGCGGAAAGCGGAGCGAGAGAGAGTCTATTGGCGGAGAGCATGAAGCCGAGCGTGCCTCATGTTCTCGAGGAAGCGACGATGATGACGGAGGCGGCGACGGAGGCGGCAGAGATGGAGACGGAGACGGCGACGGCGACGGCGACGGCGACGGAGATACTTCCAGAAAAAAGCTCCGGCTGTCGAAGGAACAATCGATTGTGCTGGAGGAAACGTTCAAGGAGCACAATACCCTCAATCCGAAGCAAAAACAGGAATTGGCAAAACGGCTGAATCTGAGGCCGAGACAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACCAAGCTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAGGAGATGTTGTGAGACTTTGACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAACTGAGGGCATTAAAGCTATCCCCACAATTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCTTGTGAGCGCGTTGCGGTGTCATCCACATCCTCCTCCTCATCCGCAGCGGCAGCTGTGTCGTCCAACTCAGCCCCATTGAGCTCTACCATTCAAAGGCCGGTGCCCCTCCTCCCCTGGGCGGCTAACTCGAATCGAAACCGCCCGGGTGACAGCTTAAATCCCCGGCCATGA 879 0.5438 MNPSQSLMQKPSRTLPNQRASWNDIFQLPDRSCEARTLLRGVDVNLAPPSTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGGDGGGRDGDGDGDGDGDGDGDTSRKKLRLSKEQSIVLEETFKEHNTLNPKQKQELAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQFYMHMNPPTTLTMCPSCERVAVSSTSSSSSAAAAVSSNSAPLSSTIQRPVPLLPWAANSNRNRPGDSLNPRP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00045 292 Pfam HD-ZIP protein N terminus 7 79 IPR006712 GO:0005634
Pral4093g00045 292 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Pral4093g00045 292 MobiDBLite consensus disorder prediction 1 22 - -
Pral4093g00045 292 CDD homeodomain 126 183 IPR001356 GO:0003677
Pral4093g00045 292 MobiDBLite consensus disorder prediction 42 132 - -
Pral4093g00045 292 SUPERFAMILY Homeodomain-like 113 183 IPR009057 -
Pral4093g00045 292 MobiDBLite consensus disorder prediction 77 132 - -
Pral4093g00045 292 MobiDBLite consensus disorder prediction 56 76 - -
Pral4093g00045 292 MobiDBLite consensus disorder prediction 270 292 - -
Pral4093g00045 292 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Pral4093g00045 292 SMART HOX_1 124 186 IPR001356 GO:0003677
Pral4093g00045 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 259 - -
Pral4093g00045 292 Coils Coil 188 218 - -
Pral4093g00045 292 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Pral4093g00045 292 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Pral4093g00045 292 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Pral4093g00045 292 FunFam Homeobox-leucine zipper protein 18 112 187 - -
Pral4093g00045 292 Gene3D - 130 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00045 Pral-Chr4093 820350 822600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00045 8 285 Homeobox Transcription Factor Family AT3G60390 60.137 1.90e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4093g00045 HD-ZIP_N 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00045 K09338 - qsa:O6P43_026962 334.724