Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00036 ATGGCGTCGTGTTTGGCTTCTGCGTCCTCCAAATTCAAATACGACGTGTTCATAACTCTGAGAGATCCCAAGGGTTGTGTAAAAGGCTATGTCGTGAACAAATTGAGAGATGCTGGAATCAGAGCTTTCGTCGACGACGAAGAAGAAGAAGTGTTTTCCGTACAGGAGGCCGTATCAGGGTCAATGATTGTCATGGTTTTGTTCACGCCGGAGTTCCTCACGTCGAAGAAGTGTCTCAAGAGACTGGTGGCCAGGACTATGTGGTGGAATGACAACGCGATGCCTGTATTCTGTGGAGTAAGCCGGCGGCAAGTGCATGACGAGATGGTGGCTTTGGCTCCCAGATTTGACCTCACGGGAGTTGCTTCCCGACCTGGCTTCAAACTCTCCGTTGATTCCGGGAATGAATTCAGTAGCTGCATGTCAAACTTGGGTTTTTCCATGTTGCACGATGAGTCATTTCATGACCTTCCATGCTATCAAGTAGGGTTACCACTTCGTGTGAGAGAATTGCTTAATATTTTGGGGTTGAAATACATTTTGTCGGATGATACAATCATAGTTGGAATCTGGGGAGATGGAGGTATTGGTAAAACAACGATTGCCAAAGCTATTTATGATAGAATCGGTGGCAATTTTGATGGTAAAAGTTTCCTTTCAAATATTAAGGATGTGTGGAAGGAAGGTAACGGTGAAATTCTCCTAAAAAATCAACTTATTTCAGATATTTCTGAAACTAAACTTGATAAGACAGATGATGTTGTGATGCATGAACTAATGATGCAAGAACTCAGTGGAAGAAGAGTCTTAGTGGTACTTGATGATGTCAATTGTGAATTTCAACTCAAGGAATTGTGCGGAAATGTGAAGTGGTGTGGTAAAGGGAGCTTGATATTCATTACAGCAAGAAATAAGGCTATCTTAGATGCCTTTGCTGACATATCATATGAAATGAAAAGGTTAAACAGAAAGGAGTCTCTTAAACTTTTTTGCTTGCATGCATTTAAGAAATTTACTCCAACAAATGATTTTGAGGATTTTTCAGAGCAAGTCATTGGATACTGTGAAGGACTACCCTTGGCTCTCGAAGTCTTTGGCTCTCTTTTGCATAATAGGACGAAAAACGAGTGGGAAAAAATGATGAATAACATGGGAGGAATTTCTTGTGGTCCAATGCAAAAGAAGCTCAAAATTAGTTGTGAGTTATTAACTGATATAGAGAAAGATATATTTTTTAATATAGCTTCTTTTTATGTGGGTCAGAGTAAACACCATGTTACACAATTGTTAAAAAGCTCAAGACTTCCTGCCGAAACGGGAATGTCAGTAATCATTGAGCGTAATCTTGTAAAGGTCATGAATGACAAGCTTTATGTTCATGATTTGCTACAAGAGATGGGAAAGGAAATCAGTCATAGTAAGCCGAAGTTCATATATAACTATGACGTATTCTTAAGTTTTAGAGGTGACGACACACGCAAATCTTTCACTTCTCATCTTTGCAGTGCTTTAAAGCAAGCAGGTATTGAGGTCTACATGGATGAGGAAAGAATTGAAAAGGGAGAAAATATTTCATCTTCATTATTGGAAGCAATTGAAAGTTCAAGAATTTCAATTATTATATTCTCAAAGAATTATGCTGGCTCTAGTTGGTGCTTACAAGAATTAGAGAAAGTCATGGAGTGTTACAAAACAACTCATCAAGAGGTTTTACCTATATTTTTTGATGTGCGACCTTTTGAAGTTCGTAAACAACAAAACGCTTTTGGAAAAGCATGGGAAAGACTTATTAAGAGAACTTCAAGTGGCAAAATGAAGAAATTGACAACCAATGTAAAAAGAGCCCTTACAGAAGCTGCCAATTTATCTGGGTGGGACATGCATAACTACAGAACTGAAGTCGAATTAATTGGCCATGTTACTGAAACTGTTAGAATGAAGATAGGTGACAACAAATGCCTGTTTGTTGCTCACCATCCAGTGGGATTGAAGTCTCGCGTGCAAGATATCATCCAATTGCTAAGTAGTAAATCAAATGAGGTTATCATTTCAGGGATTTGGGGAATGGGGGGTGTTGGCAAGACAACAATTGCTAAAGCCATCTATAATGAAGTTGGTCAAAGTTTTGACGGAAAGTGCTTCCTTGCAAATGTTAGGGAAGTTTGGAAGCAAGATAATGGTCCGGTTTACTTGCAAGAACAACTTCTTTCAAGTATCTTAAAATCAAGAAGGATGACACTACCTGATGTAGAAATGGGAAAAACTCTAGTAAAGGAAATCCTTTGTAAGAAAAAAGTGATTGTTGTACTTGATGATATGAACAATGAAGACCAACTAAAAGCTCTGTGCGGAAGTCTTGAGTGGTTTGGTCAAGGTAGTAGAATCATTATCACTACTAGAGATCAACATTTACTTAACGTCTTAAGAGTGATTCATGTATATAGTGTGAAAGAATTGGATGACAACGAATCTCTTGAACTTTTTAGTTGGCATGCATTTAAGCAAGCAATACCTGAACAAGATTTCATTGAACTTTCAAGAAGGATAGTTTCTTACTCTGGAGGGTTGCCCCTAGCTCTTGAAATCCTTGGCTCCTATTTATATGATAGAGAAATATTGATTTGGAGAAGTGTTTTGGAGAGATTACAACAAATTCCAAATGATCAAATCCATGAGAAGCTTAAAATAAGCTATGATGGTTTGAGCGATGATATAGAGAAAGAAATATTTCTTGATATATGTTGTTTCTTTATTGGGAAGAACAAGAGCGATGTGACACAAATATTGAATGGTTGTGGACTTCATGCAGATATTGGAATTAGTCGCTTGATTGAACGAAGCCTTGTAAGAGTTGGCAACAAAAATAAGCTTGAAATGCATGACTTATTGCGTGACATGGGAAGAGAAATTATTCGTCAGCAGTCATTAGAGGAGCCTGAGAAACGTACTAGATTATGGTTTCATGACAATGTGTTGGATGTGTTAAGAGATAAAACTGGAACAATGTCCATCAAAGGACTGGCTTTAAACTTGTCAATGAACAATTCATTGTACTTGAGTGCCAAAACATTTAAGAATATGAGGAGGCTTCGTTTGCTTCAACTTGATAATGTACAACTTATTGGAGATTATAGTTATCTATCAACAAATTTGAGATGGCTTTGTTGGCATGGGTTTCCCTTAGAAAGCTTGCCAATGAACTTCAATCTAGAGAAGATAGTTGCCATTGACTTAAAGTGGAGTAATCTTGTGAAAGTTTGGGAGAAGAGCCAGTTGCTGGAGGGGTTGAAAATTCTCAACCTTAGTCATTCTCATTGCTTAATAGAGACACCTGACTTTTCAAAGATACCATATCTTGAAAAGTTAATACTCAAAGATTGTCCTCGTTTGTCTATAATTCACCATTCCATTGGTGATCTTCAATATATTGTTCTGTTAAATTTAAAGGACTGTAAAAGCCTCAGCCACCTCCCGAGAAGTGTATATCAATTGAAATCCTTGAAGACCCTCAATCTCTCTGGTTGTTCAAAGTTTGAAAAGCTAGAAGAAGACATTGAACAAATGGAATCTTTAACAACTTTGATGGCAAATCAAACTTCTATGGCTCAAGTTCCTTTCTCATTGTTGAGACTGAAAAGTATTAAATATGTGTCTCTGTGTGGCTATGAAGGATTATCACGTGATGTATTTCCATCTCTTTCTTTGTCTTGGATGTCACCATCAACACATTATTCAAAGTCATTGTCGCAAGCATTTTGGTCCATGCCAGCTTTAATTAGGGGTCTATCACATCCTTTATTTTCAAGAAGATATGAAACATCAGAAGCAAGACCGAGCACATCTCAGGTTTCATGCCAAAATGCTCCGGCATTACTTGAATTTCATGATCAAGTTCACAGAGAAAGGTCAGAAACATTGATGAGTTCTTTGATTATTCCAGTAGGGCAGTTCAACAAAATTACAGATGCCCTTCTAAAGAGTATTTCAAAGATTGATTGA 3999 0.3766 MASCLASASSKFKYDVFITLRDPKGCVKGYVVNKLRDAGIRAFVDDEEEEVFSVQEAVSGSMIVMVLFTPEFLTSKKCLKRLVARTMWWNDNAMPVFCGVSRRQVHDEMVALAPRFDLTGVASRPGFKLSVDSGNEFSSCMSNLGFSMLHDESFHDLPCYQVGLPLRVRELLNILGLKYILSDDTIIVGIWGDGGIGKTTIAKAIYDRIGGNFDGKSFLSNIKDVWKEGNGEILLKNQLISDISETKLDKTDDVVMHELMMQELSGRRVLVVLDDVNCEFQLKELCGNVKWCGKGSLIFITARNKAILDAFADISYEMKRLNRKESLKLFCLHAFKKFTPTNDFEDFSEQVIGYCEGLPLALEVFGSLLHNRTKNEWEKMMNNMGGISCGPMQKKLKISCELLTDIEKDIFFNIASFYVGQSKHHVTQLLKSSRLPAETGMSVIIERNLVKVMNDKLYVHDLLQEMGKEISHSKPKFIYNYDVFLSFRGDDTRKSFTSHLCSALKQAGIEVYMDEERIEKGENISSSLLEAIESSRISIIIFSKNYAGSSWCLQELEKVMECYKTTHQEVLPIFFDVRPFEVRKQQNAFGKAWERLIKRTSSGKMKKLTTNVKRALTEAANLSGWDMHNYRTEVELIGHVTETVRMKIGDNKCLFVAHHPVGLKSRVQDIIQLLSSKSNEVIISGIWGMGGVGKTTIAKAIYNEVGQSFDGKCFLANVREVWKQDNGPVYLQEQLLSSILKSRRMTLPDVEMGKTLVKEILCKKKVIVVLDDMNNEDQLKALCGSLEWFGQGSRIIITTRDQHLLNVLRVIHVYSVKELDDNESLELFSWHAFKQAIPEQDFIELSRRIVSYSGGLPLALEILGSYLYDREILIWRSVLERLQQIPNDQIHEKLKISYDGLSDDIEKEIFLDICCFFIGKNKSDVTQILNGCGLHADIGISRLIERSLVRVGNKNKLEMHDLLRDMGREIIRQQSLEEPEKRTRLWFHDNVLDVLRDKTGTMSIKGLALNLSMNNSLYLSAKTFKNMRRLRLLQLDNVQLIGDYSYLSTNLRWLCWHGFPLESLPMNFNLEKIVAIDLKWSNLVKVWEKSQLLEGLKILNLSHSHCLIETPDFSKIPYLEKLILKDCPRLSIIHHSIGDLQYIVLLNLKDCKSLSHLPRSVYQLKSLKTLNLSGCSKFEKLEEDIEQMESLTTLMANQTSMAQVPFSLLRLKSIKYVSLCGYEGLSRDVFPSLSLSWMSPSTHYSKSLSQAFWSMPALIRGLSHPLFSRRYETSEARPSTSQVSCQNAPALLEFHDQVHRERSETLMSSLIIPVGQFNKITDALLKSISKID 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00036 1332 Pfam TIR domain 480 644 IPR000157 GO:0007165
Pral4093g00036 1332 SUPERFAMILY Toll/Interleukin receptor TIR domain 479 625 IPR035897 -
Pral4093g00036 1332 ProSiteProfiles TIR domain profile. 479 648 IPR000157 GO:0007165
Pral4093g00036 1332 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 481 1226 IPR044974 GO:0006952
Pral4093g00036 1332 FunFam Disease resistance protein (TIR-NBS-LRR class) 478 649 - -
Pral4093g00036 1332 SUPERFAMILY "Winged helix" DNA-binding domain 889 995 IPR036390 -
Pral4093g00036 1332 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 120 IPR035897 -
Pral4093g00036 1332 Gene3D - 6 128 IPR035897 -
Pral4093g00036 1332 Gene3D Ribonuclease Inhibitor 972 1260 IPR032675 -
Pral4093g00036 1332 Gene3D - 165 314 IPR027417 -
Pral4093g00036 1332 Gene3D - 651 813 IPR027417 -
Pral4093g00036 1332 SUPERFAMILY L domain-like 1008 1232 - -
Pral4093g00036 1332 Gene3D - 320 403 IPR042197 -
Pral4093g00036 1332 Gene3D - 818 902 IPR042197 -
Pral4093g00036 1332 Gene3D - 478 650 IPR035897 -
Pral4093g00036 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 913 IPR027417 -
Pral4093g00036 1332 SMART AAA_5 184 322 IPR003593 GO:0016887
Pral4093g00036 1332 SMART AAA_5 680 817 IPR003593 GO:0016887
Pral4093g00036 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 412 IPR027417 -
Pral4093g00036 1332 SMART till_3 480 622 IPR000157 GO:0007165
Pral4093g00036 1332 SMART till_3 13 151 IPR000157 GO:0007165
Pral4093g00036 1332 Pfam NB-ARC domain 665 888 IPR002182 GO:0043531
Pral4093g00036 1332 Pfam NB-ARC domain 184 390 IPR002182 GO:0043531
Pral4093g00036 1332 PRINTS Disease resistance protein signature 1162 1178 - -
Pral4093g00036 1332 PRINTS Disease resistance protein signature 760 774 - -
Pral4093g00036 1332 PRINTS Disease resistance protein signature 683 698 - -
Pral4093g00036 1332 PRINTS Disease resistance protein signature 853 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00036 Pral-Chr4093 703542 711355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00036 162 470 WRKY Transcription Factor Family AT4G12020 26.752 1.87e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00036 - - pcin:129288830 1715.66