LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4093g00033	ATGGACTATCCGGATTGGCTGGCACCTGTGCCTTGGTGGCTGGCGGAAGAATCCTCTCCGATGAGTGAAGACCATATGACGTCTCGTTCCGAAAGGGCGCCTCAATCATTAGAAGACGGGTTAGAAAATTACGAGAGGGCGCCTCAAGCATTAGCAATTGATAACGACATGAGCTCGTCGACCGACGTGAGCAGCTGGTGGGACGAGCTTCTGGGTTCGCCGGGGGATCAGTATGATGTGTTCTTGAGCTTCAGAGGCGAAGATACTCGGGCGTCTTTCATTGCTCATCTCTATTCCTTTTTGAGCAATGCTGGAATTGTTGTTTTCAAAGATGATACGAACCTTCCTAGGGGTAATAGTATCTCAGTCGAATTGCCGCTTGGAATTGAATGTTCTACAATTTCGATCATTATCTTCTCCAAAGATTATGCTGGTTCTAGATGGTGCCTCAACGAGCTCTCAAAAATCATGGAGCTTCACAGAGCACAAGGTCGGGTAGCTCTGCCTGTGTTCTATGGCGTAGATCCGTCCCAAGTTCGTAATCAAAGCTCCACTTTTGGAGATGCGTTTCGTGATCTTATACAAAGAAGTTCACCCACAGAAGATGAAGTGTCAAGGTGGAGGACAGATCTCCGTGAAGCTGGGGGCATTGCAGGGTTTGTTGTGCTCAACTCCAAGGATGAAAGTGAGGATATCAAGAATATCGTTAAGCATGTTTGCAAAATATTGGACAAGAAAGACTTGTTTATTGCTAACCATCCTGTTGGAGTGGACTCTCGTTTGACAGATTTGATTAAAATATCAGAAAGCTATTCAATTGACAATGTTCTCCTCCTAGGGATATGGGGGATGGGGGGTATCGGTAAAACAACCATTGCCAAAGCCATTTATAATGAAATTGGTCGAAAATTTGAGAGTAGATGTTTTCTTCGTGAATCCTTTGGTGGGGGAAGCAGAATAGTTATCACTACTAGAGATAAGCATATTCTCAAATTCTTTGGAGTGAATCATGTATATGAAATAAAGACCATGGACGAAATAGAATCTATTGAGCTTTTCAGTTGGCATGCATTTAAGCAACCAAGTCCCAAAAAGGAATTCATTGACTTTTCTAGAAATATAGTTGCTTATTCTGGAGGACTGCCACTAGCCCTTGAAGTCCTTGGCTCCTATTTATTTGATAGGGAAGAGGAAGAGTGGAGAAGTGTACTAGACAAACTAAAAAGAATCCCTAAAAATGAGATACAAAAGAAGCTAAAAATAAGCTTTGATGGTTTAAGCGATGATATGATGAAAGAAATCTTCCTTGATATATCTTGCTTTTTTATTGGGATGGATAGGAGTGATGTCACGCAGATATTGGATGGTAGTGGACTTTTTCCGCACATTGGAATAAGTGTCCTTGTGGAGCGGAGCCTTGTAACTGTTGATGAGAAGAACAAGCTTGGCATGCATGATTTGCTGCGAGATATGGGGAGGGAGATAATCCGAGAACAATCACCAAAAAGCCTTGGAAACCGTAGTAGGTTATGGTTCCATGAAGATGTACTTGATGTATTATCAAAACATACTGGGCTAGCTTTGAATTTGTCACAAACCGATAAAGATTATTTTTCTACCAAAGCGTTTGAGCAGATGAAGAGACTTAGATTACTCCGCCTTGGTAATGTGAAACTTGAGGGAGACTTTAAACACATGAGCAGAGATCTCAGATGGCTTTATTGGCTTGGCTTTCCTTTGAAATACATCCCTGCCAACTTTTATCAGAAAAACTTAGTTTCTATTGAGTTGAAGTACAGTAGCCTTAGAGAATTATTGGAGAGACTAAAAATCCTCAATTTGAGTCACTCCCCTTTTTTGATGCAGACTCCTGACTTCTCAAAACTACCGAATCTTGAAAAGGTGATTCTTAAAAATTGTCCAAATTTGTCTGAGGTTCGTCCTACCATCGGGCATGCCGATAAACTCCTTTTAATAAATTTGAAGGATTGCACTAGCCTTTGCACTCTCCCAAGAAGTATTTATAACTTAAAATCACTAAAAACTCTTATTTTGTCTGGTTGTACGAGGATTGAAAAATTAGAAGATATAGAGCAAATGGATTCCTTGAACAGGGGATTATCACGTGATGTGTTTCCTTCTCTCATTTGGTCACGGATGTCCCCAGCAAATAATCCTTTATCTCTTATTTCATCACATGCATGTGAATCTTGTGTTAGTGTAATGATCATAAATTATACAAAGACAACCACTCTGTGCTACAGGCAAGATTCACTGACTTCATTTGAAGAAGCTGAGTGGAAGGAAATAATATCAAATCTAGACTCAGATGACCAAGTGGAGGTGATGGTAGTTTTTGGTAATGGATTCACTGTGAAAAGGACAACAATCTACTTAAAATACGACGAGTCATTTGATGAACAGATAGAGCATCCGCCATCACCAAGTAGAGAAGTTGATAAGAAGCCCATGCAGACTTATGTTAGAAGGAGGAAGCGACAGAAGATTAATTAA	2514	0.4053	MDYPDWLAPVPWWLAEESSPMSEDHMTSRSERAPQSLEDGLENYERAPQALAIDNDMSSSTDVSSWWDELLGSPGDQYDVFLSFRGEDTRASFIAHLYSFLSNAGIVVFKDDTNLPRGNSISVELPLGIECSTISIIIFSKDYAGSRWCLNELSKIMELHRAQGRVALPVFYGVDPSQVRNQSSTFGDAFRDLIQRSSPTEDEVSRWRTDLREAGGIAGFVVLNSKDESEDIKNIVKHVCKILDKKDLFIANHPVGVDSRLTDLIKISESYSIDNVLLLGIWGMGGIGKTTIAKAIYNEIGRKFESRCFLRESFGGGSRIVITTRDKHILKFFGVNHVYEIKTMDEIESIELFSWHAFKQPSPKKEFIDFSRNIVAYSGGLPLALEVLGSYLFDREEEEWRSVLDKLKRIPKNEIQKKLKISFDGLSDDMMKEIFLDISCFFIGMDRSDVTQILDGSGLFPHIGISVLVERSLVTVDEKNKLGMHDLLRDMGREIIREQSPKSLGNRSRLWFHEDVLDVLSKHTGLALNLSQTDKDYFSTKAFEQMKRLRLLRLGNVKLEGDFKHMSRDLRWLYWLGFPLKYIPANFYQKNLVSIELKYSSLRELLERLKILNLSHSPFLMQTPDFSKLPNLEKVILKNCPNLSEVRPTIGHADKLLLINLKDCTSLCTLPRSIYNLKSLKTLILSGCTRIEKLEDIEQMDSLNRGLSRDVFPSLIWSRMSPANNPLSLISSHACESCVSVMIINYTKTTTLCYRQDSLTSFEEAEWKEIISNLDSDDQVEVMVVFGNGFTVKRTTIYLKYDESFDEQIEHPPSPSREVDKKPMQTYVRRRKRQKIN	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4093g00033	837	SUPERFAMILY	Toll/Interleukin receptor TIR domain	74	220	IPR035897	-
	Pral4093g00033	837	Gene3D	-	343	427	IPR042197	-
	Pral4093g00033	837	SMART	till_3	77	217	IPR000157	GO:0007165
	Pral4093g00033	837	Gene3D	-	246	315	IPR027417	-
	Pral4093g00033	837	Gene3D	Ribonuclease Inhibitor	493	706	IPR032675	-
	Pral4093g00033	837	FunFam	Disease resistance protein (TIR-NBS-LRR class)	75	245	-	-
	Pral4093g00033	837	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	313	720	IPR044974	GO:0006952
	Pral4093g00033	837	MobiDBLite	consensus disorder prediction	808	837	-	-
	Pral4093g00033	837	Gene3D	-	75	245	IPR035897	-
	Pral4093g00033	837	ProSiteProfiles	TIR domain profile.	76	243	IPR000157	GO:0007165
	Pral4093g00033	837	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	438	IPR027417	-
	Pral4093g00033	837	MobiDBLite	consensus disorder prediction	808	825	-	-
	Pral4093g00033	837	SUPERFAMILY	"Winged helix" DNA-binding domain	414	520	IPR036390	-
	Pral4093g00033	837	PRINTS	Disease resistance protein signature	278	293	-	-
	Pral4093g00033	837	PRINTS	Disease resistance protein signature	675	691	-	-
	Pral4093g00033	837	Pfam	NB-ARC domain	313	418	IPR002182	GO:0043531
	Pral4093g00033	837	Pfam	NB-ARC domain	277	308	IPR002182	GO:0043531
	Pral4093g00033	837	SUPERFAMILY	L domain-like	496	705	-	-
	Pral4093g00033	837	Pfam	TIR domain	77	241	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4093g00033	Pral-Chr4093	675695	682302	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4093g00033	314	692	WRKY Transcription Factor Family	AT5G45050	34.615	1.85e-54	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4093g00033	-		-	gmx:100800964	720.694