Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00011 ATGTTTCAATACTCAAGTGTGCTTTCTTCTATACTCTCTCAGATAACCTCATCAGCTTCCAAAAATATGATCCCTAATACTTCTCCTTTAGATTCAGTTCAGCAATATCTTCTTCAAGATGATCCTTCCTCTATGATTCTCATGAATGTCTTCCTCACGTGTAATAATAACCCTAGTTTTAACCCTAGCCGCGACACTTTTTTGCCGGAGCAGGGCGTTAGTAACTCAAGTGACATGGTGTTTTCCGTTGAGCATGAGGATGCTGTGAGATCTCCGGCAGGTGATGATAGGGTTGATAATGTTAACAATGCAGGATCTGTGGTGCGTGAAGGGAACGCGCCACCGAGATGGAGGAATTACAGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTCGCGGCTGAGATCCGGGATCCGAAGAAGAACGGTGCAAGGATATGGTTGGGAACTTATGAGAGGGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGGGGTAGAAAAGCCAAACTCAATTTTCCACACCTCATTGGATCGGAACCACTACCGGAGCCGCCAAGAGTGGTTGCCGGACAGAAGCGGCGCCGCTCACCAGAACCTTCATGGGCATCAGGGAATACTTCTGAGGATGGTGGATCTCAAGGGTTAACGAAGAGGAAGAACTTGGCTGGGTTATTGAATAAGTTAGCAACAAATGGAAATCTAAGCCAGAAGCTTGAAATGGCATTGATGAAGGCATAG 750 0.4707 MFQYSSVLSSILSQITSSASKNMIPNTSPLDSVQQYLLQDDPSSMILMNVFLTCNNNPSFNPSRDTFLPEQGVSNSSDMVFSVEHEDAVRSPAGDDRVDNVNNAGSVVREGNAPPRWRNYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIGSEPLPEPPRVVAGQKRRRSPEPSWASGNTSEDGGSQGLTKRKNLAGLLNKLATNGNLSQKLEMALMKA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00011 249 PANTHER DNA-BINDING DOMAIN 90 208 IPR044808 GO:0003700|GO:0009873
Pral4093g00011 249 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 MobiDBLite consensus disorder prediction 202 218 - -
Pral4093g00011 249 CDD AP2 119 179 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 MobiDBLite consensus disorder prediction 179 220 - -
Pral4093g00011 249 MobiDBLite consensus disorder prediction 89 113 - -
Pral4093g00011 249 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Pral4093g00011 249 FunFam Ethylene-responsive transcription factor 2 118 178 - -
Pral4093g00011 249 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Pral4093g00011 249 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00011 Pral-Chr4093 124135 125072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00011 111 212 AP2-EREBP Transcription Factor Family AT2G44840 70.192 2.82e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4093g00011 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00011 K09286 - pcin:129296372 208.764