Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00007 ATGATCCCTAACAATCTTTCTTCTTTCGAATCAGTTCAGCAAAACGATCATCGTGATCCTTCATCTTTCACTTCTCTCATGACGAATAATTTCTCCTTCACGTCAAGCTCTGCTACTTCAAACCCTAACTGCGACAGTACTGCTTCGCTTGAGCAGTCTCTGAGCAACTCCAGTGGCGCGGTGTTTTCCGGTGAGCACGAAGACACCGTGAAACCATCAGCAGGTGGTGATAGAGCCGATAATAATGTTAGTAGTAATGCAGATTCTGTGGCGCGTGAAAGGAACGCGCCGCCTAGATGGAGGAATTATAGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCTGAGATCCAGGACCCGAAGAGGAACGGAGCAAGAACGTGGTTAGGGACATATAAGAAGGAAGAGGATGGAGCATTGGCTTATGATATAGCTGCTTTTAAGATGAGGGGTAGAAAAGCCAAGCTCAATTTTCCACATCTCATTGGGTCGGAATCGCCGCCAGAGCTGCCGGAAAGAGTAGTCAGCGAGACGAAGCTGCAGTGCCACTGGCCGGAATCTTCATCGCCGTCAGGGTGTGCATCTGAGGATAACGGTGGATCTCAAGGGTCAAGTAGTAAGAAGAGGCTGACTAGTCTATTGAATAAATTAGCAACAAATAGAAGCCAAGTCAGAAGCTTGAAATAA 690 0.4841 MIPNNLSSFESVQQNDHRDPSSFTSLMTNNFSFTSSSATSNPNCDSTASLEQSLSNSSGAVFSGEHEDTVKPSAGGDRADNNVSSNADSVARERNAPPRWRNYRGVRRRPWGKFAAEIQDPKRNGARTWLGTYKKEEDGALAYDIAAFKMRGRKAKLNFPHLIGSESPPELPERVVSETKLQCHWPESSSPSGCASEDNGGSQGSSSKKRLTSLLNKLATNRSQVRSLK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00007 229 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 SUPERFAMILY DNA-binding domain 102 161 IPR016177 GO:0003677
Pral4093g00007 229 MobiDBLite consensus disorder prediction 1 63 - -
Pral4093g00007 229 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Pral4093g00007 229 Gene3D AP2/ERF domain 101 161 IPR036955 GO:0003700|GO:0006355
Pral4093g00007 229 PANTHER DNA-BINDING DOMAIN 49 205 IPR044808 GO:0003700|GO:0009873
Pral4093g00007 229 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Pral4093g00007 229 MobiDBLite consensus disorder prediction 182 211 - -
Pral4093g00007 229 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00007 Pral-Chr4093 78425 79114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00007 103 184 AP2-EREBP Transcription Factor Family AT2G44840 61.053 1.07e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4093g00007 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00007 K09286 - pcin:129296372 194.897