Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00004 ATGATCCCTAACAATCTTTCTTCTTTCGAATCAGTTCAGCAATACGATCATCATGATCCTTCATCTTTCACTTCTCCCATGACGAATAATGTCTCGTTCACGTCAAGCTCTGCTACTTCAAACCCTAACTGCGACATTACTGCTTCGCTTGAGCAGGCTCCGGGCAACTTCAGTGGCACGGTGTTTACCGGTGAGCACGAAGACACCGTGAAACCATCAGCAGGTGGTGGTAGGGCTGATAATAATGTTAGTAGTAATGCAGATTCTGTGGCGCGTCAAAGGAACGCGCCGCCTAGATGGAGGAATTACAGAGGTGTGAGGTGTCGGCCATGGGGGAAGTTCGCGGCTGAGATCTGGGACCCGAAGAGGAACGGAGCAAGAACGTGGTTAGGGACATATGAGACGGAAGAGGATGCAGCATTGGCTTATGATAGAGCTGCTTTTAAGATAAGGGGTAGAAAAGCCAAGCTCAATTTCCCACATCTCATTGGGTCCGAATCGCCGCCAGAGGTGCCGGAACGAGTAGTCAGCGAGACGACGCCGCAGTGCCACTCGCCAGAATCTTCATCGCGGTCAGGTTGTGCATCTGAGGATAACGGCGGGTCTCAAGGGTCAAGTAGTAAGAAGAAGAGGCTGACTAGTCTATTGAATAAATTAGCAACAAATAGAAGCCAACTTCCCAAAATGAACCCTAATTTTTCTCCTGTTGAATCAGTTCAACAATACCTTATTGAAGATGACCCTTCCTTCATGGCTCTCTTGAATGGCTTCTTCATGGACAACCATACTCGGAATCTGAGCTATGACGCTGCTTTGCCGGAGCTGCAGGGTGTTAGTAACTCCAGTGATACGGTGTTTTCTGGCGGGATTAATGATGACAAAATTATGGCTCGGCCAGGTGGTTATGATATGGCTGGTGGTAGTAACCCAGGATCTGTGACGTGTGAAAAGAACGCGCCACCTAGATGGAGGATTTACTGA 981 0.4852 MIPNNLSSFESVQQYDHHDPSSFTSPMTNNVSFTSSSATSNPNCDITASLEQAPGNFSGTVFTGEHEDTVKPSAGGGRADNNVSSNADSVARQRNAPPRWRNYRGVRCRPWGKFAAEIWDPKRNGARTWLGTYETEEDAALAYDRAAFKIRGRKAKLNFPHLIGSESPPEVPERVVSETTPQCHSPESSSRSGCASEDNGGSQGSSSKKKRLTSLLNKLATNRSQLPKMNPNFSPVESVQQYLIEDDPSFMALLNGFFMDNHTRNLSYDAALPELQGVSNSSDTVFSGGINDDKIMARPGGYDMAGGSNPGSVTCEKNAPPRWRIY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00004 326 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Pral4093g00004 326 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Pral4093g00004 326 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Pral4093g00004 326 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Pral4093g00004 326 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Pral4093g00004 326 MobiDBLite consensus disorder prediction 78 92 - -
Pral4093g00004 326 MobiDBLite consensus disorder prediction 160 210 - -
Pral4093g00004 326 PANTHER DNA-BINDING DOMAIN 51 212 IPR044808 GO:0003700|GO:0009873
Pral4093g00004 326 MobiDBLite consensus disorder prediction 1 63 - -
Pral4093g00004 326 Gene3D AP2/ERF domain 101 161 IPR036955 GO:0003700|GO:0006355
Pral4093g00004 326 MobiDBLite consensus disorder prediction 178 210 - -
Pral4093g00004 326 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Pral4093g00004 326 MobiDBLite consensus disorder prediction 1 94 - -
Pral4093g00004 326 SUPERFAMILY DNA-binding domain 102 161 IPR016177 GO:0003677
Pral4093g00004 326 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00004 Pral-Chr4093 49938 57895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00004 103 184 AP2-EREBP Transcription Factor Family AT2G44840 64.211 2.61e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4093g00004 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00004 K09286 - pcin:129296372 181.415