Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00003 ATGAACTCTAATCATTCTCCCTTCGAATCATCATTTCAACAATACCTGATCGAAGAAGACGATCCTTCCTCCTCCATGGCTATCATGAATGGCTTCTTCACTGGCAGCAACAGTACTTCGAATCTGGACTTTGACATGGCTTTGCCGGAGCAGGGTGTTAGCAGCTCCACTGGCACAGTGTTTTCCGGCGAGAATGACAACCCTATGAAACCAGGTGATGATGACAGAATGAACGGTAGTGACGCGGGATCTGTGGCGCGTGAAGGGAACGCGCCACCAAGATGGAGGAAATACAGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTTGCTGCTGAGATCCGGGACCCGAATAGAAACGGTGCAAGGACATGGCTGGGAACTTTTGAGAAGGAAGAGGATGCAGCTCTGGCTTATGATAGAGCCGCTTTCAAGATGCATGGTAGAAAAGCCAAGCTCAATTTTCCTCACCTCATTGGGTCGGAGCCACCGCCGGAGCCGGCAGCAAGAGCGGTGGCTGGACAGAAAGGGTACAGCTCGCCGGAACCTTGGCCGCCGTCAAACCATACATCTGAGGATGATGGATCTGAAGGGCCAAGCAAGAAGAAGAGCCTGACTAAACTATTGAACAAGTTAGCAGCAAATAGAAGCCATGTCAGATTGGGTTGA 666 0.5165 MNSNHSPFESSFQQYLIEEDDPSSSMAIMNGFFTGSNSTSNLDFDMALPEQGVSSSTGTVFSGENDNPMKPGDDDRMNGSDAGSVAREGNAPPRWRKYRGVRRRPWGKFAAEIRDPNRNGARTWLGTFEKEEDAALAYDRAAFKMHGRKAKLNFPHLIGSEPPPEPAARAVAGQKGYSSPEPWPPSNHTSEDDGSEGPSKKKSLTKLLNKLAANRSHVRLG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00003 221 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Pral4093g00003 221 MobiDBLite consensus disorder prediction 155 204 - -
Pral4093g00003 221 MobiDBLite consensus disorder prediction 53 99 - -
Pral4093g00003 221 CDD AP2 97 157 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 FunFam Ethylene-responsive transcription factor 2 96 156 - -
Pral4093g00003 221 PANTHER DNA-BINDING DOMAIN 67 193 IPR044808 GO:0003700|GO:0009873
Pral4093g00003 221 PRINTS Ethylene responsive element binding protein signature 137 157 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Pral4093g00003 221 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00003 Pral-Chr4093 29685 30350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00003 89 160 AP2-EREBP Transcription Factor Family AT2G44840 74.324 6.08e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4093g00003 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00003 K09286 - pcin:129296372 196.052