Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4092g00018 ATGATCCCTAACAATCTTTCTTCTTTCGAATCAGTTCAGCAATACGATCATCATGATCCTTCATCTTTCACTTCCCTCATGATGAATAACGTCTTCTTCACGTCAAGCTCTGCTACTTCAAACCCTAACTGCGACAGTACTGCTTCGCTTGAGCAGGCTCCGAGCAACTCCAGTGGCACGGTGTTTTCCGGCGAGCATGAAGACACCGTGAAACTATCAGCAGGCTGTCACAGGGCTGATAACAATGTCAGTAGTAATGCAGATTCTTTGGCGCGTGAAAGGAACGCGCCGACTAGATGGAGGAATTACAGAGGTGTGAGGCGTCGGCCGTGGGGAAAGTTCGCCGCTGAGATCCGGGACCCGAACAGGAACGGAGCAAGAACGTGGTTAGGGACATATGAGACGGAAGAGGATGCAGCATTGGCTTATGATAGAGCTGCTTTTAAGATAAGGGGTAGAAAAGCCAAGCTCAATTTTCCACATCTCATTGGGTCCGAATCGCCGCCAGAGGTGCCGGAAAGAGTAGTCAGCGAGAAGAAGCCGCAGTGCCACTCGCCGGAATCTTCATCGCCGTCAGTTTGTGCATCTGAGGATAACCGTGGATCTCAAGGATCAAGTAGTAGGAAGAAGAGGCTGACTAGTCTGTTGAATAAATTAGCAACAAATAGAAGCCAAGTCAGAAGCTTGAAATAA 693 0.4877 MIPNNLSSFESVQQYDHHDPSSFTSLMMNNVFFTSSSATSNPNCDSTASLEQAPSNSSGTVFSGEHEDTVKLSAGCHRADNNVSSNADSLARERNAPTRWRNYRGVRRRPWGKFAAEIRDPNRNGARTWLGTYETEEDAALAYDRAAFKIRGRKAKLNFPHLIGSESPPEVPERVVSEKKPQCHSPESSSPSVCASEDNRGSQGSSSRKKRLTSLLNKLATNRSQVRSLK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4092g00018 230 Gene3D AP2/ERF domain 101 161 IPR036955 GO:0003700|GO:0006355
Pral4092g00018 230 PANTHER DNA-BINDING DOMAIN 55 206 IPR044808 GO:0003700|GO:0009873
Pral4092g00018 230 MobiDBLite consensus disorder prediction 182 230 - -
Pral4092g00018 230 MobiDBLite consensus disorder prediction 42 64 - -
Pral4092g00018 230 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Pral4092g00018 230 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Pral4092g00018 230 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Pral4092g00018 230 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Pral4092g00018 230 SUPERFAMILY DNA-binding domain 102 161 IPR016177 GO:0003677
Pral4092g00018 230 MobiDBLite consensus disorder prediction 160 230 - -
Pral4092g00018 230 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Pral4092g00018 230 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Pral4092g00018 230 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4092g00018 Pral-Chr4092 208309 209001 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4092g00018 103 198 AP2-EREBP Transcription Factor Family AT2G44840 60.550 7.16e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4092g00018 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4092g00018 K09286 - pcin:129296372 182.57