Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4092g00002 ATGTCTGATCGTTTACCCCAAGAAATTGTGGAGGAAATCCTTCACAGACTACCCGTCAAGTCTCTTGTGAAATTCATCACTGTTTGCAGAGCTTGGAATTCCCTCATCACAAATCGAACTTTCGTATCTGATCATCTCAACCGTACAATCCAAGCTTCCAATAGCCGGGGCTCCCTCTTTTTTCAGTTCTCTCTTACAGGATACAAAGGGCAGATTCATCTTCATGGAGAGCAGTTTTACTCATTATACTCAGTTAATCAGCAAACCGACCACTTCTCTGTAGAGAGATTCCCACTCTCTCATCTATTTCGGCGGGATCGTCCTGAAATATTTGCTGGCACATGCAATGGCATCGTCTGTGCTGCTGACTATTCATCCTTCCATTCCGCAACCATCCTTATTTGGAATCCCTTGCTTCGGAAATATTTGGTGCTTCCCAAACCAATTATGACCTGCAAAAACGGCAAAAGTCAACTTGATGACAAGTATCGTCTACATTTTGGGTTTGGTTTTGATTCCAAGAACAACGATTACAAGGTCATTAGACTCATGATTCTTTGCGATAAACAAGATACTCCTCATGTTGAGGTGTACTCTCTTGTTTCTCGTTCTTGGAGAATTATTGATGTTACAGTTCCACCATTTTTCATTTGTTATTTACGCCATTGGTTTACCCCTGTAACTGTGAATGGGGCGGTACACTGGGTTGTTGGTCGTCGGAGATGTGATGGTCCATGGTACAAATTTATTTTGTCATTTGATGTAAATGAAGAGACATTTGGAGAATTAATGTTACCACAACAGTGGAGGGAGGTTGAGTCAACATTACTTGCTGTGGAAGGAGGCCATTCGCTTTCCGTGGTGAATCATTTTATGAAAAGGAACCGACGGGTGTTCAGTGTTTGGGTGATGAAAAAATATGGTATTATCGATTCATGGACTGAAATATTCCAATGTGATTCAGAATGTTATGGGGGCGTATTAGACATATTAGCTCTAACTCGTGGTGGAAAAGTGGTTGTGAGACTTGCAAGTGAAGTTATTACTTTAATTGATCCAATCAATGGATCGTTGGAGCCTGTGGGACGTCAGGGATATTCTGAAGCTTATGTTGGATCTTATGTTGAGAGTTTGTTCCTAATAAACAAAGAACCTGATGTTTTGTCTTTCTAA 1173 0.4092 MSDRLPQEIVEEILHRLPVKSLVKFITVCRAWNSLITNRTFVSDHLNRTIQASNSRGSLFFQFSLTGYKGQIHLHGEQFYSLYSVNQQTDHFSVERFPLSHLFRRDRPEIFAGTCNGIVCAADYSSFHSATILIWNPLLRKYLVLPKPIMTCKNGKSQLDDKYRLHFGFGFDSKNNDYKVIRLMILCDKQDTPHVEVYSLVSRSWRIIDVTVPPFFICYLRHWFTPVTVNGAVHWVVGRRRCDGPWYKFILSFDVNEETFGELMLPQQWREVESTLLAVEGGHSLSVVNHFMKRNRRVFSVWVMKKYGIIDSWTEIFQCDSECYGGVLDILALTRGGKVVVRLASEVITLIDPINGSLEPVGRQGYSEAYVGSYVESLFLINKEPDVLSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4092g00002 390 Pfam F-box domain 3 38 IPR001810 GO:0005515
Pral4092g00002 390 NCBIfam F-box protein interaction domain 114 342 IPR017451 -
Pral4092g00002 390 CDD F-box_AtFBW1-like 5 41 - -
Pral4092g00002 390 ProSiteProfiles F-box domain profile. 1 50 IPR001810 GO:0005515
Pral4092g00002 390 PANTHER BNACNNG10540D PROTEIN 3 324 - -
Pral4092g00002 390 Gene3D - 3 41 - -
Pral4092g00002 390 Pfam F-box associated 227 322 IPR006527 -
Pral4092g00002 390 SMART fbox_2 5 45 IPR001810 GO:0005515
Pral4092g00002 390 SUPERFAMILY F-box domain 3 53 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4092g00002 Pral-Chr4092 51169 52341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4092g00002 166 320 Carbohydrate Esterase AT1G25141 25.478 1.37e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4092g00002 - - pcin:129288916 375.941