Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4090g00016 ATGCAATTCTCCTTCCTTTTTGTTGTGATCTTCTTTCTCTTAACCGTACTTTTGGCTTGTGGTCGCCTTCGAAGGTACAAGTTTTCTTCAAATTCTCTGGCCGTCGGAGAAGAAAGCTCCCCCGTGGGCGGCGTCGTCGATGTCGTCACTGATGATGAAAGCAATTTACGCAGAAACTCGTGGCCGCTTTACTACTCGCAGGCGAAGCGGATCAGCAATGTCTTCAATCCTTCTTCTTGTTCAATCTGCTTGAGGGATTATAAGGAAACTGATAAGTTGAGATTGCTTCCGGATTGTGGCCACCTTTATCACCTTCACTGTGTCGATCCATGGCTCAGGTTGCATCCTACTTGTCCCTTGTGTCGAACTTCTTCTTCTCCCTCTGTAGTTAGTAATTCTATGCAAAATACCGTGATAGTTAATGTTGCTTAG 432 0.4537 MQFSFLFVVIFFLLTVLLACGRLRRYKFSSNSLAVGEESSPVGGVVDVVTDDESNLRRNSWPLYYSQAKRISNVFNPSSCSICLRDYKETDKLRLLPDCGHLYHLHCVDPWLRLHPTCPLCRTSSSPSVVSNSMQNTVIVNVA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4090g00016 143 SUPERFAMILY RING/U-box 79 128 - -
Pral4090g00016 143 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 135 IPR045899 -
Pral4090g00016 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 129 IPR013083 -
Pral4090g00016 143 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Pral4090g00016 143 Pfam Ring finger domain 79 122 IPR001841 -
Pral4090g00016 143 CDD RING-H2_PA-TM-RING 79 122 - -
Pral4090g00016 143 SMART ring_2 80 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4090g00016 Pral-Chr4090 326289 326720 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4090g00016 65 138 C3H Transcription Factor Family AT5G06490 56.757 2.61e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4090g00016 - - pcin:129289096 157.918