Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4086g00007 ATGGCCGATCCTTTCTCCAATTTCTTCTCTCCTCCTCCTCCTTCTGGATTTTTCCAATTCAATCCCATCCCTTACTATTATCCCCCTCCTCCTCCTCCCACCGCTCCTCCGGTATCATACCAACACCATCATCATCATCCTTATCTCCACAACTTCATCGCTTCTTCTTCTTCTTCTTCGCCTCCCACTTCCCCACCTCTCAGGGAAGCCCTCCCTCTTCTGAACCTCGACCCCACTAAGCATGGATCACATCATGAGCCTCATCATCATCATCACCAGTCTTGCAGTACTTCCATGGAAGTGGAGGACAGTACTGCTCCTAAGACTAAAGAAGAAGAAGATGATGAAGAGGAGGAGGAAGAAGAGGATGAGAATAGTGTGACTGTTGCACTCCACATAGGGCTGCCTAACCCTAGTGCTGCTGAGATGGCTTCTATCCTCTCTTCTTCCTCCACTCACGCACAAGAAGCAGCAGCAGATGGTGATGCTTTTGTGGATAACTCTTGCTCTGGACTCTCCAGGATCAACAAGGGCCAGTACTGGATCCCTACTCCTACTCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAAGCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGATGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTCAAGGATTTTAGAACCCTTCAGACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTCGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAACTGCGGGAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAACACAAGAGGTCGCTTAAAGATCATATCAAGGCTTTTGGGAGCGGCCATGCTGCGTATGGGATCGCTGGCTTAGAAGAAGAAGATGAGCCAGCATCCGAAGTAGAGCAAGATAATGAATCCACCTAG 1068 0.4906 MADPFSNFFSPPPPSGFFQFNPIPYYYPPPPPPTAPPVSYQHHHHHPYLHNFIASSSSSSPPTSPPLREALPLLNLDPTKHGSHHEPHHHHHQSCSTSMEVEDSTAPKTKEEEDDEEEEEEEDENSVTVALHIGLPNPSAAEMASILSSSSTHAQEAAADGDAFVDNSCSGLSRINKGQYWIPTPTQILIGPTQFSCPVCSKSFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIAGLEEEDEPASEVEQDNEST 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4086g00007 355 MobiDBLite consensus disorder prediction 109 125 - -
Pral4086g00007 355 Gene3D Classic Zinc Finger 257 332 - -
Pral4086g00007 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Pral4086g00007 355 MobiDBLite consensus disorder prediction 52 127 - -
Pral4086g00007 355 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Pral4086g00007 355 PANTHER ZINC FINGER PROTEIN WIP2 42 352 IPR043584 GO:0003700|GO:0010468
Pral4086g00007 355 SUPERFAMILY beta-beta-alpha zinc fingers 186 217 IPR036236 -
Pral4086g00007 355 SMART c2h2final6 195 217 IPR013087 -
Pral4086g00007 355 SMART c2h2final6 279 299 IPR013087 -
Pral4086g00007 355 FunFam Zinc finger protein WIP2 248 330 - -
Pral4086g00007 355 Gene3D Classic Zinc Finger 194 217 - -
Pral4086g00007 355 SUPERFAMILY beta-beta-alpha zinc fingers 261 299 IPR036236 -
Pral4086g00007 355 Pfam Zinc finger, C2H2 type 195 214 IPR013087 -
Pral4086g00007 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 299 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4086g00007 Pral-Chr4086 35260 37709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4086g00007 1 353 C2H2 Transcription Factor Family AT3G57670 61.340 3.02e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4086g00007 zf-C2H2_6 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4086g00007 - - tpra:123897861 484.182