Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4086g00006 ATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTAGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTCACTCAGTTGCTGATAGCTGTGGACTACTTGCACTCTAATCGTGTGCTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGATAACGACATTCGTCTTGGTGACTTTGGTCTGGCAAAGCTGCTTAACACGGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCGAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGATGCTGCATGTTTGAAATTGCAGCACATCAACCAGCATTTCGTGCTCCTGATATGGCTGGGCTTATCAATAAAATAAATAGGTCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACCTTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCGACAGCAGCTGAGTTGTTAAGGCACCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAATTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGGCAGAAAAGAACGTAAGGACAAAGAATTGGGATTACAAAATCTTTTGATTAGGATTCATCCATTTCAGGGAAATGAAGATATGCCTAAGAACGGCAAGCAATCAGTCTCAAGCAGTGCAGAAGACATCCTTCAGACCAAGCTGGTTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGGGCAAGGAAGCAGACTATAAAAGCATACCTACAAGGGAGACAACTGACAATGAAATTACGTCAGAGGGTATCCCAGTTCCTAAGCATGAAGAACAAGTAGTTGCTGCTGAACAACGAAAATCAGAAGGGGTTGACATGATTGCAGGGACCACGGAAGTTGAGGATGCTTTTCCTAATGGAGATTACGATAAAGCTGAAGTGCGGAGAGATGTCAATCTTGAGGACTTCAGGAAATCAACAGCTTCAAGCGAAGGAAGCACTGATAAAGGTGGGTCTCTTGATGAGGAATTGTCACCACCAGCGTTGCAGCCTAGCAGTAAGGTTGAAGATGACCCTGAATCGGGAGGAGTCTACTTACAGAAGAGGGAAGGCCCAGATGCATTTACAGAAGGCTCCCATATGTGCTTATCTTCTGAGACTAATGATACCGTGGCAGCTAATGATGAAGGCGGAGAAAAGCCACACGACCTGAGTTGCTCCAGGCATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCAAGTGACAATTCATTGAGTACAATTACTGCAAGAGGGGGTGATGAAGCCAAGAGCGAGTTGGATAGTTCCTGCCAGGAAAGAGCTCATGCTCTAGAGACCCTACTTGAATTATGTGCTGAGCTACTCAAGCAAGACAAACTCGAAGAGCTTGCCGGCGTGCTGAGACCATTTGGGCCGGAAGCCGTCTCTTCCAGAGAGACGGCAATATGGTTGACAAAGAGCCTCATGTCTGCACAAAAACTCAATCCTGAAACCTAA 1743 0.4378 MNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGGRKERKDKELGLQNLLIRIHPFQGNEDMPKNGKQSVSSSAEDILQTKLVDPTSFITESSTSISGSKDGSTTSESTICSMGKEADYKSIPTRETTDNEITSEGIPVPKHEEQVVAAEQRKSEGVDMIAGTTEVEDAFPNGDYDKAEVRRDVNLEDFRKSTASSEGSTDKGGSLDEELSPPALQPSSKVEDDPESGGVYLQKREGPDAFTEGSHMCLSSETNDTVAANDEGGEKPHDLSCSRHKENDSACVVDQTPSDNSLSTITARGGDEAKSELDSSCQERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKLNPET 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4086g00006 580 CDD STKc_Nek 1 207 - -
Pral4086g00006 580 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00006 580 FunFam serine/threonine-protein kinase Nek6 isoform X2 33 221 - -
Pral4086g00006 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Pral4086g00006 580 SUPERFAMILY Protein kinase-like (PK-like) 3 237 IPR011009 -
Pral4086g00006 580 MobiDBLite consensus disorder prediction 489 506 - -
Pral4086g00006 580 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 506 - -
Pral4086g00006 580 MobiDBLite consensus disorder prediction 298 382 - -
Pral4086g00006 580 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00006 580 Gene3D Transferase(Phosphotransferase) domain 1 1 286 - -
Pral4086g00006 580 MobiDBLite consensus disorder prediction 466 488 - -
Pral4086g00006 580 MobiDBLite consensus disorder prediction 298 319 - -
Pral4086g00006 580 Pfam Protein kinase domain 2 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00006 580 MobiDBLite consensus disorder prediction 395 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4086g00006 Pral-Chr4086 18718 23385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4086g00006 1 208 MAP Kinase Kinase Kinase AT1G53570 34.286 1.85e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pral4086g00006 Pkinase 6.4e-53 CL0016