Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4086g00005 ATGGAGACCGATAATGGTGACCCCAGGTCCAAGATGGAAGACTATGAAGTGATTGAGCAAATTGGCAGAGGGGCATTCGGCTCCGCTTACCTTGTTCTCCATAACTCTGAGAATAAGAAGTATGTGTTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAGCGAACAGCGCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTAGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTCACTCAGTTGCTGATAGCTGTGGACTACTTGCACTCTAATCGTGTGCTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGATAACGACATTCGTCTTGGTGACTTTGGTCTGGCAAAGCTGCTTAACACGGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCGAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGATGCTGCATGTTTGAAATTGCAGCACATCAACCAGCATTTCGTGCTCCTGATATGGCTGGGCTTATCAATAAAATAAATAGGTCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACCTTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCGACAGCAGCTGAGTTGTTAAGGCACCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAATTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGGCAGAAAAGAACGTAAGGACAAAGAATTGGGATTACAAAATCTTTTGATTAGGATTCATCCATTTCAGGGAAATGAAGATATGCCTAAGAACGGCAAGCAATCAGTCTCAAGCAGTGCAGAAGACATCCTTCAGACCAAGCTGGTTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGGGCAAGGAAGCAGACTATAAAAGCATACCTACAAGGGAGACAACTGACAATGAAATTACGTCAGAGGGTATCCCAGTTCCTAAGCATGAAGAACAAGTAGTTGCTGCTGAACAACGAAAATCAGAAGGGGTTGACATGATTGCAGGGACCACGGAAGTTGAGGATGCTTTTCCTAATGGAGATTACGATAAAGCTGAAGTGCGGAGAGATGTCAATCTTGAGGACTTCAGGAAATCAACAGCTTCAAGCGAAGGAAGCACTGATAAAGGTGGGTCTCTTGATGAGGAATTGTCACCACCAGCGTTGCAGCCTAGCAGTAAGGTTGAAGATGACCCTGAATCGGGAGGAGTCTACTTACAGAAGAGGGAAGGCCCAGATGCATTTACAGAAGGCTCCCATATGTGCTTATCTTCTGAGACTAATGATACCGTGGCAGCTAATGATGAAGGCGGAGAAAAGCCACACGACCTGAGTTGCTCCAGGCATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCAAGTGACAATTCATTGAGTACAATTACTGCAAGAGGGGGTGATGAAGCCAAGAGCGAGTTGGATAGTTCCTGCCAGGAAAGAGCTCATGCTCTAGAGACCCTACTTGAATTATGTGCTGAGCTACTCAAGCAAGACAAACTCGAAGAGCTTGCCGGCGTGCTGAGACCATTTGGGCCGGAAGCCGTCTCTTCCAGAGAGACGGCAATATGGTTGACAAAGAGCCTCATGTCTGCACAAAAACTCAATCCTGAAACCTAA 1929 0.4406 METDNGDPRSKMEDYEVIEQIGRGAFGSAYLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGGRKERKDKELGLQNLLIRIHPFQGNEDMPKNGKQSVSSSAEDILQTKLVDPTSFITESSTSISGSKDGSTTSESTICSMGKEADYKSIPTRETTDNEITSEGIPVPKHEEQVVAAEQRKSEGVDMIAGTTEVEDAFPNGDYDKAEVRRDVNLEDFRKSTASSEGSTDKGGSLDEELSPPALQPSSKVEDDPESGGVYLQKREGPDAFTEGSHMCLSSETNDTVAANDEGGEKPHDLSCSRHKENDSACVVDQTPSDNSLSTITARGGDEAKSELDSSCQERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKLNPET 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4086g00005 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Pral4086g00005 642 MobiDBLite consensus disorder prediction 457 578 - -
Pral4086g00005 642 MobiDBLite consensus disorder prediction 551 568 - -
Pral4086g00005 642 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00005 642 MobiDBLite consensus disorder prediction 360 444 - -
Pral4086g00005 642 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Pral4086g00005 642 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00005 642 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Pral4086g00005 642 CDD STKc_Nek 14 269 - -
Pral4086g00005 642 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 568 - -
Pral4086g00005 642 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4086g00005 642 Gene3D Transferase(Phosphotransferase) domain 1 97 351 - -
Pral4086g00005 642 MobiDBLite consensus disorder prediction 528 550 - -
Pral4086g00005 642 MobiDBLite consensus disorder prediction 360 381 - -
Pral4086g00005 642 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Pral4086g00005 642 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Pral4086g00005 642 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4086g00005 Pral-Chr4086 18185 23385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4086g00005 21 270 MAP Kinase Kinase Kinase AT1G53570 32.549 3.91e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pral4086g00005 Pkinase 9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4086g00005 K08857 - gmx:100793379 866.3