Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4085g00012 ATGGAGCAAACTACAGGAGGCCTGCCCGGATCCGGTCTTGCTATTCGTGAGCATGACAAGACCGCGCTTGAATCCATCCAGTTCAACCAGGAAATTCAGGGAATCATGGCACCGCCCCCTGAAAACGCCAGCTCCTTCACTGCACTTCTCGAACTCCCGCCGCCGCAAGCCGTGGAGCTCCTTCACTCGCCGGACTGTGGTGGAACCGCCGCTACTAGCAGCGCGTCTGCGAAATCCCTATGCCAAATCAACAACCAGAAACCCTATCTATTCCACTCTTTCAGTGGCAATTTAACCTTTCCTGCGAACGCCGCTTTGATTGAACGCGCTGCCAAGTTCTCTGTGTTTGCCGGGGAAAACTCTAACCCAGAGGATTCCAGCGTGGTTGGACGTAATTCGAGTGCCAATTTGGATAAAGTAAAGAATGAGCCCCCAGAGAGCGATTCGAATCCTAGTCCAATGCAGGGCTGTGCTTCTGATCCCACCGTAGAGAACCCGAACCAGAGGGCTGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCCTCAAAGAAGAGCAAGGGCGTCGCCGACGAGGCCTCCGGGGAAGCGGAAAAGCTTCCCTATGTTCATGTCCGAGCTCGTCGAGGTCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGATATCGGGAACTGCATTGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGACAAGTGGAGTTCTTATCAATGAAATTGGCCACGGTTAATCCAAGAATTGACTTCAACCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGATTGTAATTTCCCCAGCACGGTTGCACCTTTGATGTGGCCGGAAATCCCAGTCAATGGAAACAGACAGCAATATCAACAACAGTGGCATGTTGATGCATTCCACCAACCACTTTGGGGCAGAGAAGGAGGAAACCATAACTTTATCACTCCAGATAACTCTTTTTTGAGTTATGACTCGTCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAACTGTGA 1119 0.5004 MEQTTGGLPGSGLAIREHDKTALESIQFNQEIQGIMAPPPENASSFTALLELPPPQAVELLHSPDCGGTAATSSASAKSLCQINNQKPYLFHSFSGNLTFPANAALIERAAKFSVFAGENSNPEDSSVVGRNSSANLDKVKNEPPESDSNPSPMQGCASDPTVENPNQRAAKRKEREKKVKVSSKKSKGVADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLATVNPRIDFNLDSILATEGASLMDCNFPSTVAPLMWPEIPVNGNRQQYQQQWHVDAFHQPLWGREGGNHNFITPDNSFLSYDSSANSATLHSNQLKMEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4085g00012 372 Coils Coil 252 272 - -
Pral4085g00012 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Pral4085g00012 372 CDD bHLH_AtBPE_like 202 287 - -
Pral4085g00012 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 339 IPR024097 GO:0006355
Pral4085g00012 372 MobiDBLite consensus disorder prediction 182 197 - -
Pral4085g00012 372 MobiDBLite consensus disorder prediction 119 197 - -
Pral4085g00012 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Pral4085g00012 372 FunFam transcription factor bHLH48-like isoform X1 209 281 - -
Pral4085g00012 372 MobiDBLite consensus disorder prediction 119 166 - -
Pral4085g00012 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Pral4085g00012 372 Gene3D - 209 281 IPR036638 GO:0046983
Pral4085g00012 372 SMART finulus 218 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4085g00012 Pral-Chr4085 48227 54287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4085g00012 22 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 56.201 3.81e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4085g00012 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4085g00012 - - gmx:100814124 497.664