Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4085g00007 ATGGCACCGCCCCCTGAAAACGCCAGCTCCTTCACTGCACTTCTCGAACTCCCGCCGCCGCAAGCCGTGGAGCTCCTTCACTCGCCGGACTGTGGTGGAACCGCCGCTACTAGCAGCGCGTCTGCGAAATCCCTATGCCAAATCAACAACCAGAAACCCTATCTATTCCACTCTTTCAGTGGCAATTTAACCTTTCCTGCGAACGCCGCTTTGATTGAACGCGCTGCCAAGTTCTCTGTGTTTGCCGGGGAAAACTCTAACCCAGAGGATTCCAGCGTGGTTGGACGTAATTCGAGTGCCAATTTGGATAAAGTAAAGAATGAGCCCCCAGAGAGCGATTCGAATCCTAGTCCAATGCAGGGCTGTGCTTCTGATCCCACCGTAGAGAACCCGAACCAGAGGGCTGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCCTCAAAGAAGAGCAAGGGCGTCGCCGACGAGGCCTCCGGGGAAGCGGAAAAGCTTCCCTATGTTCATGTCCGAGCTCGTCGAGGTCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGATATCGGGAACTGCATTGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGACAAGTGGAGTTCTTATCAATGAAATTGGCCACGGTTAATCCAAGAATTGACTTCAACCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGATTGTAATTTCCCCAGCACGGTTGCACCTTTGATGTGGCCGGAAATCCCAGTCAATGGAAACAGACAGCAATATCAACAACAGTGGCATGTTGATGCATTCCACCAACCACTTTGGGGCAGAGAAGGAGGAAACCATAACTTTATCACTCCAGATAACTCTTTTTTGAGTTATGACTCGTCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAACTGTGA 1014 0.498 MAPPPENASSFTALLELPPPQAVELLHSPDCGGTAATSSASAKSLCQINNQKPYLFHSFSGNLTFPANAALIERAAKFSVFAGENSNPEDSSVVGRNSSANLDKVKNEPPESDSNPSPMQGCASDPTVENPNQRAAKRKEREKKVKVSSKKSKGVADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLATVNPRIDFNLDSILATEGASLMDCNFPSTVAPLMWPEIPVNGNRQQYQQQWHVDAFHQPLWGREGGNHNFITPDNSFLSYDSSANSATLHSNQLKMEL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4085g00007 337 Gene3D - 174 246 IPR036638 GO:0046983
Pral4085g00007 337 FunFam transcription factor bHLH48-like isoform X1 174 246 - -
Pral4085g00007 337 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Pral4085g00007 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Pral4085g00007 337 SMART finulus 183 233 IPR011598 GO:0046983
Pral4085g00007 337 MobiDBLite consensus disorder prediction 84 131 - -
Pral4085g00007 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 246 IPR036638 GO:0046983
Pral4085g00007 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 78 304 IPR024097 GO:0006355
Pral4085g00007 337 MobiDBLite consensus disorder prediction 147 162 - -
Pral4085g00007 337 Coils Coil 217 237 - -
Pral4085g00007 337 CDD bHLH_AtBPE_like 167 252 - -
Pral4085g00007 337 MobiDBLite consensus disorder prediction 84 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4085g00007 Pral-Chr4085 30903 54287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4085g00007 4 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 57.618 2.74e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4085g00007 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4085g00007 - - vun:114168708 465.692