Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4085g00006 ATGGATTTGAATTCGCATCAGAATTATCTGCCCCAGCCGCATCAATCCAATTCAGGATTGGCTCGGTTTCGCTCTGCGCCCAGCTCGCTTCTCGCTAATTTCAGACAAGCTGCTGAATCTGTTAAATCCGAGAGACGAATTTCGAGATTCGCAAACAGCAGTAATAGCAACGATACGGCGTCGTCAAGCTTTCAAGAATTCGAATCCGAACACAAGCCCCCTAAATCTCCATCGGAGGCTGCTCTGAGCCGTATGAATTCCCAGCAAGGCTATAGTGGCAGCGGGCTGCCACCTCACTATCCAAGGCATAGTTCTTCTTACAGTTCTTCCATGGACACCTCCTTTGGACAGATGGGTTCAATTGGAATGGATCACGTAACTCAGCCGAAAAGCTTTGCTTCGCCTCTTCTTAGGCAAAGTAGCTCCCCTGCTGGTCTTTTCTCCAACATCTCATTTGCTAATGAAATTGCAGCGTATGGCTCCAACAAAGGGATAAGAAACTATGGCGGGATGAACGGCAGTAGCAATGATGGACTTACTCCATCTATCAACAACGGATTGAAGAATCAGATTGGCTTCTCATCAAGAAGTAGCTCCCTAGGAGCCCTGTCCCACATCTCTGAAAATGAATGTGAGGGTACTGGAGCAACGAGCCCAGATGATGGTAGAGTGGGAGCTAATAACAGTGGCGATACTCGGTATTATGGCCCTGGCTTTCCTTATGCTTCTTGGAATGATACCTCATATGTGTCAGAAAATCTCCCTGGTTTTAAAAGAGATCAAACTGGCAATGAAAAGGTGTACTCTGACGTTCAGAATATTGAGCCTGGAAGTCGGGTTAATGTATTATCGCATCACTTGAGTTTGCCAAAAACCCCATCACATATGGCTGCTGTGGAGAAGTTTCTTCAATTCCCAGATTCTGTGCCTTGTAAAATAAGAGCAAAGCGGGGCTGCGCCACTCATCCACGAAGCATAGCCGAAAGGGTCAGAAGAACTCGTATCAGTGAGCGAATGAAGAAGTTACAAGATCTTGTCCCAAACATGGACAAGCAAACGAACACGGCAGACATGTTGGACTTGGCTGTTGTGTATATTAAAGATCTTCAGAAACAATTCAAGACTCTGAGTGAGAAACGGGCAAATTGCAAATGTACTAACGCGCGGAAAGCACATGGAAATTAA 1185 0.4591 MDLNSHQNYLPQPHQSNSGLARFRSAPSSLLANFRQAAESVKSERRISRFANSSNSNDTASSSFQEFESEHKPPKSPSEAALSRMNSQQGYSGSGLPPHYPRHSSSYSSSMDTSFGQMGSIGMDHVTQPKSFASPLLRQSSSPAGLFSNISFANEIAAYGSNKGIRNYGGMNGSSNDGLTPSINNGLKNQIGFSSRSSSLGALSHISENECEGTGATSPDDGRVGANNSGDTRYYGPGFPYASWNDTSYVSENLPGFKRDQTGNEKVYSDVQNIEPGSRVNVLSHHLSLPKTPSHMAAVEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVVYIKDLQKQFKTLSEKRANCKCTNARKAHGN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4085g00006 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 369 IPR011598 GO:0046983
Pral4085g00006 394 MobiDBLite consensus disorder prediction 210 231 - -
Pral4085g00006 394 MobiDBLite consensus disorder prediction 47 67 - -
Pral4085g00006 394 SMART finulus 325 375 IPR011598 GO:0046983
Pral4085g00006 394 MobiDBLite consensus disorder prediction 80 112 - -
Pral4085g00006 394 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 384 - -
Pral4085g00006 394 MobiDBLite consensus disorder prediction 37 112 - -
Pral4085g00006 394 Coils Coil 366 386 - -
Pral4085g00006 394 Gene3D - 320 391 IPR036638 GO:0046983
Pral4085g00006 394 FunFam Transcription factor bHLH130 family 320 389 - -
Pral4085g00006 394 Pfam Helix-loop-helix DNA-binding domain 324 370 IPR011598 GO:0046983
Pral4085g00006 394 MobiDBLite consensus disorder prediction 1 23 - -
Pral4085g00006 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4085g00006 Pral-Chr4085 29129 32061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4085g00006 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.885 9.39e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4085g00006 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4085g00006 - - qsa:O6P43_006556 419.083