Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00052 ATGTCTTCCAGTATCAACCAAACAACAACTCACCACGAACCACTTCTATCTCCTCCACACCGTCGTCGTCATCAGCAACCACAACAGCATCATCATACCCAAGATCAACATGTTTCTTTCGGAATAATGCAATCTTCTCCTCCGTCGACGTTTTCCGTCCCCGGAAACTACCTAAGCAAGGATTCCGGAGCTTATGATCTGGGAGATTTGGATCAGGCCCTTTTTCTCTATCTTGATGGACAACAAGACCCATCCAGTGTTCAACACCAAAGACAGAACTCGTCATCGTCACAAATAAAGCCTCCCACTCTCAACATATTCCCATCCCAACCTATGCATATCCACCTGCCCTCATCCAAGGCTAGCATGGAAGTAGCTCCTCCGCAAGGCAGCAGTGGTCCCAAAGCCCCGTCTGAGCCGTCAGTGGATTTGGCCAACCCGCGGAACGAAGCCGCCTCGGCCTCTGAACCAACCAATTCCAAAACGGTCAAGCGAGAGAACAATCGTAAGGGTCCAACGCCGAGTTCTGAACAGGAAGGCCCCAAAACCCCCGATCCTAAGACTCTCAGAAGACTTGCTCAGAATAGAGAGGCGGCCAGGAAAAGCAGGCTCAGGAAAAAGGCATATGTTCAGCAGCTAGAGTCAAGTAGAATTAGGCTTAATCAGCTGGAGCAAGAGCTACATCGTGCTAGAGCTCAAGGAGTATTTTTGGCGGGAGGTGCAGCTTTGGGAGGAGAACAAGGCCTTCCTATGGCTATGAGCAGCATTAGCTCAGAGGCTGCAATGTTCGACGTAGAATATGCGAGATGGCTAGAAGAACACCATCGAATAGTGTGCGAGCTAAGAGCTGCAGTTCAAGAGCACCTTCCAGAGAACGAGCTGCGGCTGTTTGTAGATAATTGCTTGGCACAATATGACCAATTAACGAATCTCAAGAGCTTACTGGCCAAAACAGACGTATTCCACATCGTGTCTGGCATGTGGATCACCCCAGCCGAACGATGCTTCATGTGGATCGGTGGGTTCAGGCCATCAGAACTCATTAAGATAATTGTGAGTCAAATTGAACCCCTGACGGAGCAACAAATACTGGGAATATATGGGTTGCAACAGTCTACGCAAGAGGCAGAAGATGCTCTCTCCCAAGGGCTTGAGGCTCTCAATCAATCTCTCTCGGACACTATAACATCTGACTCACTGAGCTGTCCGCCCAATATGGCCAACTTCATGGGACAGATGGCCATGGCCATAAATAAGCTCTCTACTCTAGAAGGTTTCGTGAGACAGGCAGATAATCTGAGGCAACAGACCATTCACCGTCTGCATGAGATACTGACGACGCGGCAGGCGGCGAGGTGTATGCTGGCCATCGCCGAGTACTTCCATCGTCTCAGAGCTCTCAGTTCTCTGTGGATGGGACGACCTCGTCAAGAATGA 1437 0.499 MSSSINQTTTHHEPLLSPPHRRRHQQPQQHHHTQDQHVSFGIMQSSPPSTFSVPGNYLSKDSGAYDLGDLDQALFLYLDGQQDPSSVQHQRQNSSSSQIKPPTLNIFPSQPMHIHLPSSKASMEVAPPQGSSGPKAPSEPSVDLANPRNEAASASEPTNSKTVKRENNRKGPTPSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELHRARAQGVFLAGGAALGGEQGLPMAMSSISSEAAMFDVEYARWLEEHHRIVCELRAAVQEHLPENELRLFVDNCLAQYDQLTNLKSLLAKTDVFHIVSGMWITPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGIYGLQQSTQEAEDALSQGLEALNQSLSDTITSDSLSCPPNMANFMGQMAMAINKLSTLEGFVRQADNLRQQTIHRLHEILTTRQAARCMLAIAEYFHRLRALSSLWMGRPRQE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00052 478 MobiDBLite consensus disorder prediction 32 55 - -
Pral4084g00052 478 MobiDBLite consensus disorder prediction 83 189 - -
Pral4084g00052 478 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Pral4084g00052 478 Coils Coil 206 233 - -
Pral4084g00052 478 MobiDBLite consensus disorder prediction 83 105 - -
Pral4084g00052 478 Gene3D - 186 235 - -
Pral4084g00052 478 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Pral4084g00052 478 Pfam bZIP transcription factor 187 217 IPR004827 GO:0003700|GO:0006355
Pral4084g00052 478 PANTHER TRANSCRIPTION FACTOR TGA9 96 477 - -
Pral4084g00052 478 FunFam BZIP family transcription factor 186 235 - -
Pral4084g00052 478 Pfam Seed dormancy control 278 353 IPR025422 GO:0006351|GO:0043565
Pral4084g00052 478 ProSiteProfiles DOG1 domain profile. 260 474 IPR025422 GO:0006351|GO:0043565
Pral4084g00052 478 SUPERFAMILY Leucine zipper domain 187 229 IPR046347 GO:0003700|GO:0006355
Pral4084g00052 478 SMART brlzneu 183 269 IPR004827 GO:0003700|GO:0006355
Pral4084g00052 478 MobiDBLite consensus disorder prediction 1 55 - -
Pral4084g00052 478 CDD bZIP_HBP1b-like 187 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00052 Pral-Chr4084 290278 296642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00052 55 478 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.864 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral4084g00052 DOG1 4.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00052 K14431 - gmx:100815176 699.508