Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00043 ATGAGTTCCCCCTCTGCTGCTGAAGCAGCCGCCGCCGCCGCCGCCGCCTCCAACTCCTCGACGGAGTCCCTGAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGCCGTGGGAGGTGCTGTGAAATCCAGCGGCGGGGCGTCGTCGTCGTCGTCTTCAGGAGTGACCCCGACTAAGAAGGGAAGGGGTAGTGGGGCTCAGGGGGCTCAGCCTCCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAGTATGCACTCCAAATCACCCAGGGTCGTTGTCGCAGGTCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGTCGCAGGCGGCTTGCTGGTCATAATGAGCGGAGGAGGAAACCCCCACCGAGCTCCTTGATGGCTTCTCGATATGGCCGACTTGCTCCAGCTAGTTTTGATAACAGCAATAGCAGAGGTGGTGGATTTCTAATGGAATTCGCTTCGTATCCGAAACTTAGCCTGAGAAATTCAGTGCCAACACCACCATCATCCGAGCAGCTTCCTGGGAATCCAACAGTGACATTTCCATGGCCGGGCCATTCAGAGTCTCCATCACTGCTTTTCTTGCAAGCAGGCTGTTCTCCAGTTGGCGGGACAAGCTACTCTGGATCCAGAAATTCTTCATCAGGGGAAAGCTTCTCGGGATTGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACAGAGCACCAAGTCTTGGTACAAATAATTTGATGAGCTTCGACGACACGCCCATCACGCATCTTCCTGCCTCTTCTCATCACGGACACGGGACATCCCTCCATCATCAACTTTCAAATGCCTCGTGGTGCTTCAAGGGCATTGATGCTGCTGCTGATAACTGTTCTCATGACGTCGTCCCTGACCTGGGCCTGGGTCATCAAATTTCGCAGCCTATCGGTAGCTCTCTTCCTGGGGAGCTTGACGTGTCACAACAGGGCAGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTCTATGAAGATTCTCAGCAGCACATGCACTGGTCTCTCTAG 1149 0.53 MSSPSAAEAAAAAAAASNSSTESLNGLKFGQKIYFEDVAVGGAVKSSGGASSSSSSGVTPTKKGRGSGAQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPRVVVAGQEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLMASRYGRLAPASFDNSNSRGGGFLMEFASYPKLSLRNSVPTPPSSEQLPGNPTVTFPWPGHSESPSLLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNLMSFDDTPITHLPASSHHGHGTSLHHQLSNASWCFKGIDAAADNCSHDVVPDLGLGHQISQPIGSSLPGELDVSQQGRRHYMDLEQSRVYEDSQQHMHWSL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00043 382 Gene3D - 67 138 IPR036893 GO:0003677|GO:0005634
Pral4084g00043 382 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Pral4084g00043 382 Pfam SBP domain 77 150 IPR004333 GO:0003677
Pral4084g00043 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 353 IPR044817 GO:0003677
Pral4084g00043 382 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
Pral4084g00043 382 MobiDBLite consensus disorder prediction 46 63 - -
Pral4084g00043 382 MobiDBLite consensus disorder prediction 44 77 - -
Pral4084g00043 382 MobiDBLite consensus disorder prediction 141 160 - -
Pral4084g00043 382 MobiDBLite consensus disorder prediction 1 23 - -
Pral4084g00043 382 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00043 Pral-Chr4084 248735 252369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00043 27 382 SBP-box Gene Family AT3G57920 40.691 2.24e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4084g00043 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00043 - - pcin:129298462 637.491