Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00039 ATGGGCTCTGCAAAATCATCAACCACCATTATGGGCGGTTTTGAATCCCCCGCTTCTGCTTTTTATGCAGCAGAACGATGCATGGGGTTTCCGCAATATCATTCCCAAGCGAACATAAATAATCCCTCTTTTGGCTCTCCATTTTCTAAGATTCACGATTTGGAACTCCCTTTGTATCAATCTCCCAGGGAAAACACTTTCTTGGATCATTCGCCACACCAAGTTAACTTCAATGTCGAATCATCTAACCCCTTGCAAGCAGTGGCTAGATCCCAAGTAGACCCAGAAAGACCCAATAAAACTCCATGTGGACGTTTGCCAACCGACAAGTTTCTTCCAACTGAACAACACAAATTGTTCATTGATGTTGATTATGCCTCAGTCAGGGGAAACCATACGCAGGTTGGTTGTGGGTCATACAATTTACCTCTTTCTCATGTAAGCTTCTCCTCACAGCAAGAGAAGCTGTGTCCAACGGTTTCGGCAGCAAGTGTTACAATTAATGGAAATCCTACTTCTAATGGTGGGGCAGTAATCCCAAGTAAATCACGTATAAGGTGGACTCAGGATCTTCACGAGAAGTTTGTTGAATGTGTGAATCGCCTTGGGGGCTCTGAGAAGGCTACACCAAAAGCCATATTAAAGCTGATGAACACAGATGGGCTGACCATCTTCCATGTAAAGAGTCACTTGCAGAAATGTAGAATTGCAAAATACATGCCAGATCCAGCTCAAGGGAAGTCTGACAAAAAAGCCCATATAGACGATGTGCATCAAATTGATGTTAAAACTGGCTCGCAAATCAGAGAGGCGCTTCAGCTACAGCTAGATGTTCAGAGGCGTCTCCATGAACAGCTAGAGATTCAGAGAAGATTACAGCTTCGAATTGAAGAGCAAGGAAAGCAGCTGAAGATGATGTTTGACCAGCAGCAGAAAACATGTAATAGCTTCTCGAATCTGGGCAGTACAGAAAATGATGATCCATCAGTTAGTCATAAAGAGGTTGAGGTTTCAATTGCCGAGGGGTCTGGAAATTCCTCCTTCCCTTCCAAGATATGTTAG 1062 0.4369 MGSAKSSTTIMGGFESPASAFYAAERCMGFPQYHSQANINNPSFGSPFSKIHDLELPLYQSPRENTFLDHSPHQVNFNVESSNPLQAVARSQVDPERPNKTPCGRLPTDKFLPTEQHKLFIDVDYASVRGNHTQVGCGSYNLPLSHVSFSSQQEKLCPTVSAASVTINGNPTSNGGAVIPSKSRIRWTQDLHEKFVECVNRLGGSEKATPKAILKLMNTDGLTIFHVKSHLQKCRIAKYMPDPAQGKSDKKAHIDDVHQIDVKTGSQIREALQLQLDVQRRLHEQLEIQRRLQLRIEEQGKQLKMMFDQQQKTCNSFSNLGSTENDDPSVSHKEVEVSIAEGSGNSSFPSKIC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00039 353 Pfam MYB-CC type transfactor, LHEQLE motif 267 313 IPR025756 -
Pral4084g00039 353 SUPERFAMILY Homeodomain-like 180 236 IPR009057 -
Pral4084g00039 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 170 329 IPR044848 GO:0003700
Pral4084g00039 353 FunFam Myb family transcription factor 181 239 - -
Pral4084g00039 353 Coils Coil 269 289 - -
Pral4084g00039 353 NCBIfam myb-like DNA-binding domain, SHAQKYF class 182 237 IPR006447 GO:0003677
Pral4084g00039 353 Gene3D - 181 240 - -
Pral4084g00039 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 239 IPR017930 -
Pral4084g00039 353 Pfam Myb-like DNA-binding domain 186 234 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00039 Pral-Chr4084 230122 233593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00039 173 310 G2-like Transcription Factor Family AT4G28610 58.571 2.20e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4084g00039 Myb_DNA-binding 5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00039 - - ccaj:109797364 406.757