Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00032 ATGGCGTCAAAAGGTCCGAGGTCTAAGATTGATCACGAAAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGCCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAGTTGGCTCAGGCAAAAAAAGTTGCTTTTAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGATTACGGAAAGTTGCACTAAATATTTCAAAGGATGTTAAGAAATTTTGGATGAAAATAGAGAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAAAGATACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAGAAACAGTCACCAGAGCATCATAGGGGTGCCCAATACAAGGAAGTAGATGAAGATGTTATCGACAAATCTGATGAAGCTAATGCTGCAGAGTTTCAGTCAGATCCTATTGACAATGATGAAGAATACGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCGCTTATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCAGCTTTGCATGATGAAGTTGATCTTCCCCTTGAGGAGTTACTGAAACGTTATTCTGGAGAGAGAGCAGGACCAGTTAGGCAAGAAAGTAGTCCAGAGCACAGTGATGATGACAATAAAGAAGTCAGAGCCGGTGATGGAAATGAAAATGGAGACAGTTTTTTATCTGTTAACAAGCTTGACTCGAGCAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGAAAGTAATGGTGGCTTAACTACACCAGCAGAGAATATAGCCAAAGATAAGACTTGTCAATCTGAAAATCCTGAATATGACTTTAGTGATGAAGAGGAAGATGGTGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCTGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCAAAGGATGAGATTGTTTTATTACAAAGGGAGAGTGACATGCCCGTTGAGGAACTCCTTGCAATGTATAGAAAGTATTCCAGTGGCAAACATAGGGAGGATGACTCTGAAGATGCTGCTTCTTTATCGGAAGATCTTTTGGATTCTTCACTGCATGAAGATGATAGGAAGAAGGTTCCTGCTGTTTCTGTGGATGAAGATGTTAAGCCTGTTGAGCACATGGCTTTTGTACAGTCCCAGACTGAAGAACAACATTGGGAAGAGCCTCATGAAAATGCGGAGGGAAGGGATAGTGAAGATCTGATAGCAGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCTTTTCTTCTCAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAGGTTGAATGGGATTTTGGCTGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAGATTTTGACTTATTTTGGAAGTGCAAAAGAGCGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTCCATGTGTGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAATGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGCACACCGCTACAGAATGATCTTATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGGGAGGAAAAAGTAAATAAGGAGGTCATTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACGAGATGTGGAGAAGCAACTGCCAATGAAACATGAGCATGTCATATACTGTAGATTGTCAAAAAGGCAGCGAAATTTGTACGAGGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAACCATCCTGACCTTTTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTGCTGTGTGTTCAGTGTTCTCAACTAGCCCCTTTTCTTCAGTAGACCTAAGAGGTTTGGGATTTTTATTTACTCATCTTGATCATAGCATGACGTCATGGGAGAGTGATGAAGTGAAAGCTATTGAAACCCCTGCAAGTTTAATCATGGAGCGTGCTGATATGAATGGCCTGCAAGTAATTAGGCCTAAATCGAAGGATCAGAAAAGTTTTCAAGGAACTAACATATTTGAGGAAATTCAGCGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCAAAGGAACGTGCAGCAGCCATTGCATGGTGGAATTCCTTGAGATGTAAAAAAAGGCCTGTCTATTCAACAACCCTACGGGATCTTCTTACTATTAGGCATCCTGTATATGACATTCACGATATGAAGGCTAACCCTAGGTCATACGTGTATTCCTCAAAGCTAGCTGACATTATCCTCTCACCTGTCGAACGTTTTGAAAGGATGGTTGATGTTGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCGCGAGCTTCACCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACACCAGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTATCACCAATTAGGCCAGCAATTGTCAGACGGCAGGTGTATTTCCCAGATAGGCGTCTTATTCAATTTGACTGTGGCAAACTGCAGGAACTTGCAAGACTGTTGAGGAGATTGAAATCAGAAGGTCACCGAGCATTGATATTCACACAGATGACAAAGATGCTTGATGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTATATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAGACCCTGATGCAACGTTTCAACACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGAAGTGGTGGTGTTGGTATCAATCTTGTTGGAGCGGACACAGTTATATTCTATGATAGTGACTGGAATCCTGCTATGGATCAGCAGGCTCAAGATAGATGCCATCGGATTGGTCAGACACGCGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATATTGAAGAAAGCAAAACAAAAGCGTGCACTTGATGATTTAGTTATACAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCAGGTCATAGAACACTTCAAGTGAAAAACGTGCAGAAGGAGAAAAGCCAGATCATTGGGGATGAAGTTTCTGTAAGTAATGCTGATGTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTAGAAGAGGCTGTGGAAAACCAGGAGTTTACAGAAGAGGCCATTGGGAGGCTTGATGAGGATGAGTATGTGAATGAAGACGATACAAAAGTCGATGAACCTTCAGAATTAGCTGAAGCAGTTTCTAAGCCAAGTAAAGAGAACGCATTAATGTTAGTTGCAAGTGATCCTAAGGAAGAAAGACCTCTCTCCGTGTCTATCAAAGAAGATGATGCTGACGTGCTGGCTGATGTCAAACAGATGGCTGCTGCGGCTGCAGCGGCTGGACAAGCTATCTCAGCCTTTGAGAACCAGCTACGCCCAATTGACCGGTATGCCATTCGTTTTCTGGAGATGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTGGATCGTATTGAGAAGTACAAGGAGGATATGGAAGCTGAAATTGATGAAGATGAAGAGCCTCTTGTGTATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCCAAGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAAGGATTCTAAGCCCAGACCTAAAAAGAAACCCAAGAAGACCAAGTTTAAGTCCTTGAAGAAAGGATCTTTAGCCTCTGAATCCAAACCTATGAAAGAAGAACCACTGACAGACCCAATGTTAACAGATGATGAGGTTGTCGCTAGTCTGGACCTGGTGTCTCCAAATTTAACTATTCAGAAAAAACGTAAAAAGCCTAAGTTTATAGCTGATGGCGAAGAGAAGACACTAAAGAAGTCCAAGAAGACTAAGAGGGCTGCTGATATCTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGAACATGCAGAATCAAAGCAATGTGAAGGCACAGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACCCCTATGCCCGTCAAACGGATCCTGACAATAAAACCAGAAAAGGTGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCATCAGCTGATTATTGGCTGCCGCAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTCTATGGTATGACTGCTGGTGGATCATACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTTCAAAAATATGTTTTGTCAACGGCAGACAATGCTAATCATGAGAGGGGCAACAATCCTGCCTCTGGAAAGTCTCTTCTGAAAGTGACGGAGGATAATGTTCGGGTGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGGGAGTTATTACTGCAGAAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGGCAGCATCACGTGTTGACCGAACGCGAAATCCGCCCCCAGCACAAAATGGCCACTATTTTGATCATAGCTTCTTTACTCCCATGGGTCATAATTCTCAGAGTCTTCTGAAGAAGCCTTCTGAAAGGATGATTGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCTGCTGCACTTGATGACACCAGCAGTAGGCAACAGGATGATAAAATGTCTCTCTCAAATCAGGGTGACGATGTGCCAGTGACTACTGATCAGCTGGATGTGACAGTGGAATTCCCGAAAGACGAGAGTGACACCTTAATCTCGTTTCCTTCTGTTATAAATTTATCCATACAGGGGACAGAGCCCTTACCATCGTTAATTTACCCAAATGGGGAAGATGATCATCTTAGAGCCTGTGGATCTATTGCTGAGGACCGCTTCAGGGAGGCAGCCAGAGCTTGCGAGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCGACAAATGATTCAAGGTCAAGACCGGGATCTAAGATACAAGCTTCAGGAAAGCATAAGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCGAAGTCCAAACGAAATTCAATGGATCCCAGTGACATGCGTCACCAACGGGTTGAGCCATTATCCCAGTCAGTGCCATCACTCAAGCTAAATCTGAGAATCGATCTTAATTCATCAGCAATGGACGAAACGGTGGTTGATTATATGGATTGCAATCTGCCCTTCGTCCTAAATGAGGAAAATTCGTTGGAAACAGAAACTATAGATATGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTCGATGATTGTTCAGAATTGCCGGAGTATACTGACATTGGATAA 6123 0.423 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVAFRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQSPEHHRGAQYKEVDEDVIDKSDEANAAEFQSDPIDNDEEYDVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKRYSGERAGPVRQESSPEHSDDDNKEVRAGDGNENGDSFLSVNKLDSSNSSMVSGRRCDESNGGLTTPAENIAKDKTCQSENPEYDFSDEEEDGDFLLATEDNDDETTLSEEEKLEKMDAIDPKDEIVLLQRESDMPVEELLAMYRKYSSGKHREDDSEDAASLSEDLLDSSLHEDDRKKVPAVSVDEDVKPVEHMAFVQSQTEEQHWEEPHENAEGRDSEDLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSAVCSVFSTSPFSSVDLRGLGFLFTHLDHSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSKDQKSFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLRDLLTIRHPVYDIHDMKANPRSYVYSSKLADIILSPVERFERMVDVVESFMFAIPAARASPPVCWCSRSETPVFLHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRRLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLQVKNVQKEKSQIIGDEVSVSNADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYVNEDDTKVDEPSELAEAVSKPSKENALMLVASDPKEERPLSVSIKEDDADVLADVKQMAAAAAAAGQAISAFENQLRPIDRYAIRFLEMWDPIIDKAALESEVRFEDTEWELDRIEKYKEDMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEAKQKEEADEENCDPGKIQTPKDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPLTDPMLTDDEVVASLDLVSPNLTIQKKRKKPKFIADGEEKTLKKSKKTKRAADICASDSDNALLGLPDEHAESKQCEGTVESEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNAWSKDGVPSADYWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTADNANHERGNNPASGKSLLKVTEDNVRVLLDVASEQENRELLLQKHFFALLSSVWKAASRVDRTRNPPPAQNGHYFDHSFFTPMGHNSQSLLKKPSERMIVTNLAQSRKLLAAALDDTSSRQQDDKMSLSNQGDDVPVTTDQLDVTVEFPKDESDTLISFPSVINLSIQGTEPLPSLIYPNGEDDHLRACGSIAEDRFREAARACEEDSCGWASSVFPTNDSRSRPGSKIQASGKHKSSISDSIKPSKSKSKRNSMDPSDMRHQRVEPLSQSVPSLKLRXLRIDLNSSAMDETVVDYMDCNLPFVLNEENSLETETIDMVPHDFVAGLISGLDDCSELPEYTDIG 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00032 2041 Gene3D - 472 748 IPR038718 -
Pral4084g00032 2041 SMART helicmild6 1074 1157 IPR001650 -
Pral4084g00032 2041 Pfam SNF2-related domain 520 792 IPR000330 GO:0005524|GO:0140658
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 151 340 - -
Pral4084g00032 2041 Pfam Helicase conserved C-terminal domain 1045 1157 IPR001650 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 445 474 - -
Pral4084g00032 2041 Coils Coil 1389 1409 - -
Pral4084g00032 2041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 680 IPR014001 -
Pral4084g00032 2041 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1048 1198 IPR001650 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 450 470 - -
Pral4084g00032 2041 Coils Coil 207 227 - -
Pral4084g00032 2041 ProSiteProfiles Myb-like domain profile. 1636 1689 IPR001005 -
Pral4084g00032 2041 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 749 814 - -
Pral4084g00032 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 727 1234 IPR027417 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 398 427 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1475 1489 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1 33 - -
Pral4084g00032 2041 FunFam Photoperiod independent early flowering protein 1632 1693 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1911 1967 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1937 1960 - -
Pral4084g00032 2041 CDD DEXQc_SRCAP 503 725 - -
Pral4084g00032 2041 CDD SF2_C_SNF 1033 1168 - -
Pral4084g00032 2041 Gene3D - 749 801 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 225 277 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1442 1511 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 281 321 - -
Pral4084g00032 2041 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1010 1264 - -
Pral4084g00032 2041 Pfam HSA domain 27 93 IPR014012 -
Pral4084g00032 2041 Coils Coil 1437 1460 - -
Pral4084g00032 2041 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Pral4084g00032 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 725 IPR027417 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1568 1601 - -
Pral4084g00032 2041 FunFam Photoperiod-independent early flowering 1 473 748 - -
Pral4084g00032 2041 PANTHER HELICASE SRCAP-RELATED 15 1941 - -
Pral4084g00032 2041 SMART ultradead3 499 692 IPR014001 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1490 1509 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1570 1584 - -
Pral4084g00032 2041 SMART bromneu2 23 94 IPR014012 -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 191 224 - -
Pral4084g00032 2041 Coils Coil 1262 1282 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1911 1936 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 1443 1474 - -
Pral4084g00032 2041 Gene3D - 1014 1263 IPR027417 -
Pral4084g00032 2041 Gene3D - 1632 1693 - -
Pral4084g00032 2041 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00032 Pral-Chr4084 184836 198308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00032 523 795 RAD5 or RAD16-like Gene Family AT5G43530 30.124 1.65e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4084g00032 SNF2_N 1.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00032 K11661 - gmx:100794898 2994.14