Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00027 ATGGAAATCGATTCGGAGAAGAGTCTCTGCAGAGCGCTTTGTGCCTACAACTCCATGGATGAAGTGTTTGAAATTCAGAAAGAAACGTACAGGGGGCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCACTTGATGAGAACTCTCCTGTATTCCCTTGTATCCCGGTGGAAGCCTCATTTACCTGTATGCACAGTGTTGGGACTGGAGGAGGGCAAGGAATGTATCATCGTTGGAACCCTTTATAAACACATGAAGCTCAAACCTTGCATACTTGATGAGTACTCTAAGGAGAGATCTAGAACGCCACTTGTCAGGCCTCATAACTTCATGCACCCAGATGATCATCTAGTTTTGGAGGATGAAAGTGGGAGAGTTAAGCTCAGTGGGGATCTCATTTCACCTTCTGTGTATATAACAGGGATCGTAGTTGCTATACATGGGAAAGAAACTGGGGCTGGTGAGTTTTTGGTTCTAGATGTCCTGGAAGCAGGCCTACCACCACAAACAGAACTTCCTCTTAAATCAAGGGAAGACAAATATGTCGTTTTTGTGTCCGGGTTAAGTTTTGGGAGCAGCAACTCCAATCCTCTCCAATTTCAGCTCTTCATTGATCATATTACTGGTCATTTAGGAGATGAGAAGGAGCAAATTTTGGCATCCCAAATCGTTCATGTTGTCATAGCAGGGAATTCTGTTGAGTTCCCTCGTGAACTTCTTAACGGGCAGAATTTAGCTGCAAGGGATCTCTCAAGGTTGTCTGAACCAATAAAGGAACTTGATATTCTGTTGAATCAGATTGCTGTAGGTTTGCCTTTGGATATCATGCCAGGACCCATGGACCCAGCTAACTACGCATTACCACAGCAGCCTCTGCATAGATGCCTTTTCCCTGGGTCATCTGCTTATAACACTTTTAGATCCTGCACAAATCCTCACTGTTTTGAGCTTGATAATATTAGGTTTCTCGGGACATCAGGTCAAAATATAGATGATCTTGATAAGTATTCAGAGGCCAAAGATAAACTTGAATTCATGGAAAGGACTCTACGGTGGAGACATTTGGCACCAACAGCACCTAATACACTCGGGTGCTATCCTTTCACTGATAGGGATCCTTTCTTCCTTGAGAGCTGTCCCCATGTGTATTTTGTTGGAAATCAAGATAAATATGAAACTCGTGTGATCAAAGGATCTGAAGGGCAGTTGGTGAGGCTCATTTGCGTTCCTAAATTCAACGAGACTGGAGTTGCTGTTATGCTAAACCTGAGGGATCTTGAGTGTCATGCTCTTAGTTTTGGGACGCAATTCAGCTCTTAA 1320 0.4348 MEIDSEKSLCRALCAYNSMDEVFEIQKETYRGQQYSQIYFARLHLMRTLLYSLVSRWKPHLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSRTPLVRPHNFMHPDDHLVLEDESGRVKLSGDLISPSVYITGIVVAIHGKETGAGEFLVLDVLEAGLPPQTELPLKSREDKYVVFVSGLSFGSSNSNPLQFQLFIDHITGHLGDEKEQILASQIVHVVIAGNSVEFPRELLNGQNLAARDLSRLSEPIKELDILLNQIAVGLPLDIMPGPMDPANYALPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNIDDLDKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFLESCPHVYFVGNQDKYETRVIKGSEGQLVRLICVPKFNETGVAVMLNLRDLECHALSFGTQFSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00027 439 Gene3D - 172 438 - -
Pral4084g00027 439 Pfam DNA polymerase alpha/epsilon subunit B 182 391 IPR007185 GO:0003677|GO:0006260
Pral4084g00027 439 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 12 433 IPR024826 -
Pral4084g00027 439 FunFam DNA polymerase delta small subunit 167 439 - -
Pral4084g00027 439 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
Pral4084g00027 439 Gene3D - 40 164 - -
Pral4084g00027 439 CDD MPP_PolD2_C 181 433 IPR041863 -
Pral4084g00027 439 FunFam DNA polymerase delta subunit 2 40 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00027 Pral-Chr4084 164724 170625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00027 1 438 Core DNA Replication Machinery Family AT2G42120 78.539 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00027 K02328 - qsa:O6P43_005838 786.178