Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4084g00015 ATGCCCAACAAGGAAGCTGGTTTCTGCATAGCAATTGGTCAAGGTCTCCCTGAGAAAGCGTCAGAGCAGAATAACGCGAGTCCCACAGAAGACATCCAAGATGAGAGAAGAGCCTCCTCAGATCCGCCTCATCAGCTAGACCTTCTCCCCTTCTCGCCGGTTCCTCGACCCCACCCAGCTTCCCATCTTCGGATTCCTTGGCTTTCCGATTCATTGGGATCTCAACGTTTCTCACCGGATGGAGGAGCGAAGGCATTGGACGTCAACCATATGCCGGCAGTAGAAGCGGAGGAGGCAGACGACAGTACTCCACTGTCTTTGTCTCCTAATAGTGTGTCGTCGTTTCACATGGACTTCTACACAAGGAATGGCAATGCAGGAAGGATGAGCAAGAGAGACCTTAAGGTTAAAGGTGACAGAGATAGTTCTAGGGCCAGTGACGATGATGAAAATGGGTCGACTTGCAAGAAACTCAGGCTTTCCAAACAGCAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACACTACTCTTAATCCTAAGCAGAAACTGGTTCTGGCAAGACAGTTAAATCTTCGTCCTCGCCAAGTAGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACCGAAGTAGATTGTGAGTATCTGAAGAGATGCTGTGAGACGTTGACAGAAGAGAATGGGAGGTTGCAGAAGGAACTGCAGGAACTAAGGGCTTTAAAATCGTCTCAGCCATTTTACATGCAGCTACCGCCGACCACTCTCACAATGTGTCCCTCTTGCGAGAGGGTAGCCACTAACTCATCATCCTCTGCCTCCGTTACTAAGGCCAACAATGCTTCCCAGGCCTCCTTACTCATGTCTCTCTCCAACCCCAGAACAGTCCATCCCCTTGATCATAATAATGCCCAGCCTCATCCCACTCCTTCCTCATGA 948 0.4926 MPNKEAGFCIAIGQGLPEKASEQNNASPTEDIQDERRASSDPPHQLDLLPFSPVPRPHPASHLRIPWLSDSLGSQRFSPDGGAKALDVNHMPAVEAEEADDSTPLSLSPNSVSSFHMDFYTRNGNAGRMSKRDLKVKGDRDSSRASDDDENGSTCKKLRLSKQQSAFLEESFKEHTTLNPKQKLVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENGRLQKELQELRALKSSQPFYMQLPPTTLTMCPSCERVATNSSSSASVTKANNASQASLLMSLSNPRTVHPLDHNNAQPHPTPSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4084g00015 315 FunFam Homeobox-leucine zipper protein HAT22 159 205 - -
Pral4084g00015 315 Pfam Homeodomain 156 209 IPR001356 GO:0003677
Pral4084g00015 315 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677
Pral4084g00015 315 SMART halz 211 254 IPR003106 GO:0006355|GO:0043565
Pral4084g00015 315 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355|GO:0043565
Pral4084g00015 315 CDD homeodomain 156 212 IPR001356 GO:0003677
Pral4084g00015 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 285 - -
Pral4084g00015 315 Gene3D - 159 209 - -
Pral4084g00015 315 Coils Coil 224 247 - -
Pral4084g00015 315 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981|GO:0006355
Pral4084g00015 315 SUPERFAMILY Homeodomain-like 148 212 IPR009057 -
Pral4084g00015 315 MobiDBLite consensus disorder prediction 296 315 - -
Pral4084g00015 315 SMART HOX_1 153 215 IPR001356 GO:0003677
Pral4084g00015 315 MobiDBLite consensus disorder prediction 128 155 - -
Pral4084g00015 315 MobiDBLite consensus disorder prediction 13 62 - -
Pral4084g00015 315 MobiDBLite consensus disorder prediction 122 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4084g00015 Pral-Chr4084 121631 123186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4084g00015 43 274 Homeobox Transcription Factor Family AT4G17460 54.583 1.84e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4084g00015 Homeodomain 9.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4084g00015 K09338 - vvi:100265773 372.859