Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4083g00002 ATGAGGGGCAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGGGTTATAGCAGAAGACGCCGCAGTCCTAGTCCCCGTGGTCGTTATGGGGGCCGTGGTAGGGACTTGCCAACTAGTCTTCTGGTTAGGAACCTTCACAGAGATTGCAGGGCAGAAGATCTACGAGGACCTTTTGGCCACTTTGGTCCTCTCAAGGATGTTTACCTACCTCGCGATTATTATACTGGGGAGCCACGTGGATTTGGATTTGTCCAATATGTGGATCCAGCTGATGCTGCGGATGCTAAATATCACATGGACGGTCAAATTCTACTTGGTCGTGAGTTGACTGTGGTGTTTGCTGAGGAAAACAGAAAGAAGCCGGCTGAAATGAGAGCCAGAGAGCGATATAGGAGCCGATCATACAGGAGGTCTCCGCCTCGTTATTCTTACTCACCGCGCTATGCTCGAACCTATTCCGGCAGCCCATATACACCTTCTCCAAGACGAAGTCGTTATTCCGGGTCAATATCACCAAGGGACCGGAGGTATAGGGAGCGATCATACTCCAGATCACCTTACAGGGAACGATCATATTCAAGAAGCCCTAGTCGAAGCAGGAGTCCAAGTTATTACTAG 618 0.5016 MRGRSYSYSPSPPRGYSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRAEDLRGPFGHFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERYRSRSYRRSPPRYSYSPRYARTYSGSPYTPSPRRSRYSGSISPRDRRYRERSYSRSPYRERSYSRSPSRSRSPSYY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4083g00002 205 MobiDBLite consensus disorder prediction 148 167 - -
Pral4083g00002 205 SMART rrm1_1 39 112 IPR000504 GO:0003723
Pral4083g00002 205 MobiDBLite consensus disorder prediction 1 36 - -
Pral4083g00002 205 MobiDBLite consensus disorder prediction 120 135 - -
Pral4083g00002 205 MobiDBLite consensus disorder prediction 120 205 - -
Pral4083g00002 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Pral4083g00002 205 MobiDBLite consensus disorder prediction 168 195 - -
Pral4083g00002 205 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Pral4083g00002 205 Gene3D - 34 203 IPR012677 -
Pral4083g00002 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Pral4083g00002 205 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4083g00002 Pral-Chr4083 25309 27724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4083g00002 38 170 Eukaryotic Initiation Factors Gene Family AT2G36660 28.261 2.32e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4083g00002 K12900 - jre:108985117 221.476