Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4079g00004 ATGGCGATTCCTCCCCAAATCTTCCCTCCTCGTAAACGACGACCGTCGGCGGCGTCGTTTATCTCTCCCAAACTCACAGAGCTCGATCTCCTTCACTCTCTGCTTCACCTATCCCGTGAGATTTCCTCTCTCAAACCCATCCAATTCCTTCTCAAACGCAATTCCTCTTCCATCATTCGCAAAACCAATCTCCTTGCTGTTCTCTTCGAAGAGTTGATTAGAAGTTCGGTTTCTCTTTCCTTTCAATCTGCCATTCTGTGTTTCGAAGAAATGTACATAGTTCTACAGAGAATCAGGACCTTGATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATCAATTGCGGATAATCTTCACAAACTCACTGCGGATTTATCCACGCTTCTGGATATATTCCCGGTGACGGAACTTGATTTAAGCGAGGACGTACGGGAGCTTGTGATCCTCATCAGAAAACAATGCACTGAATCCAAGGCTTTTGTGGATCCAAAGGACAACGAGCTCAGGCGTGAGGTTGTCACGATGCTTGATCGTATTAAACGAGAGATCGTCCCCGATCATTCCAAGCTTGCAGATATCTTCGGGAGGTTGGAAATCCGAGATTCTTCTAGCTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCAGAATCGAACCGATGAGCAATGCAAATCCGAGCTCGTCGCTTTGATTGGACTCGTCCGTTACGCTAAATGCGTTCTTTTCGAAGCTTCCACGCCATCATCTTCTTCTTCTGATGATGTACCGCGGCGGAAACAGCCGTCGGAGATCGTTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTCGAGCTCATGCGCGACCCTGTTGTCGTGGCAACAGGACAGACGTATGACCGTGAGTCCATCAAACTGTGGCTCGAATCAGGGCATAACACGTGTCCCAAGACTGGTCAAACTATGGCCCACACAGACCTCATCCCCAACCGTGCATTGAAGAATCTCATTGCAATGTGGTGCCGCGAGCAGAAGATATTTTTTGAAACCGCGGGCGGTAACGACAGGCCTCACGGCGTTATCATCAACAAAGCCGCCTTAGAAGCTACTAGAATGACGGCGTCATTCTTAGTCAACAAATTGTCTCTTTCTCCGTCCATGGAAGCCGCAAACGCCGTCGTTTATGAGCTTCGTGTGCTGGCAAAAACAGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCTCTTAGTTAGCTACTTGAGCTTCAGCGTCGGCTCACAGAATCCAAACCTCCAAGTTAATGCCGTCACGACCATCCTCAACCTTTCCATCCTCGAAGCGAACAAAACAAGGATAATGGAGACTGACGGAGCATTAACCGGCGTCGTCGAGGTTCTTCGCTCAGGAACCACGTGGGAGGCGAAGGCCAACGCCGCCGCCACAATATTCAGCTTATCTGGCGTTCCCCCTTACAGGAAAAGACTAGGGAGGAAGACACGTGTCACGAGGGGATTGATTGACTTGGCAAGGTGTGGGCCCACAAGTGCCAAGAGGGATGCTCTGCTGGCAATTTTGACCCTGGCGACGGATAGAGAGACGGTGGCGAGGCTGGTGGAAGCTGGGGTTGTGGAGATGACGGCGGAAGTGATGGACGGGTTACCGGAAGAGGCGGTGACTATTCTTGAGGTGGTTGTGAAGCGGGGTGGGTTGGTGGCCGTCGCCGCTGCGTTCGGCAGCATTAAGAAATTGGGGGCTATATTGAGGGAAGGTTCTGATAGGGCCAGGGAGAGTGCGGCGGCGACGCTGGCCACAATGTGTCGTAAAGGGGGGTCGGACATAGTGGAGGAGTTGGCCTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCCATTGGAACTGTAAGAGGGAAACGAAAAGCCGCCACGTTGTTGAGGGCTCTCCGGCGATGGGCTGCCGGTTTGGACGGTGCAGGGTTAACGGAAGGATTTTCAACGGCCATCCCTTCGTCAGCAACGATGGTTTCAACTCAATAA 2049 0.5178 MAIPPQIFPPRKRRPSAASFISPKLTELDLLHSLLHLSREISSLKPIQFLLKRNSSSIIRKTNLLAVLFEELIRSSVSLSFQSAILCFEEMYIVLQRIRTLIEDCSNGSKMALLMQNESIADNLHKLTADLSTLLDIFPVTELDLSEDVRELVILIRKQCTESKAFVDPKDNELRREVVTMLDRIKREIVPDHSKLADIFGRLEIRDSSSCRAEIESLEEEIQNRTDEQCKSELVALIGLVRYAKCVLFEASTPSSSSSDDVPRRKQPSEIVVPADFRCPITLELMRDPVVVATGQTYDRESIKLWLESGHNTCPKTGQTMAHTDLIPNRALKNLIAMWCREQKIFFETAGGNDRPHGVIINKAALEATRMTASFLVNKLSLSPSMEAANAVVYELRVLAKTDSDSRACIAEAGAIPLLVSYLSFSVGSQNPNLQVNAVTTILNLSILEANKTRIMETDGALTGVVEVLRSGTTWEAKANAAATIFSLSGVPPYRKRLGRKTRVTRGLIDLARCGPTSAKRDALLAILTLATDRETVARLVEAGVVEMTAEVMDGLPEEAVTILEVVVKRGGLVAVAAAFGSIKKLGAILREGSDRARESAAATLATMCRKGGSDIVEELASLPGIERVIWELMAIGTVRGKRKAATLLRALRRWAAGLDGAGLTEGFSTAIPSSATMVSTQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4079g00004 682 FunFam RING-type E3 ubiquitin transferase 359 547 - -
Pral4079g00004 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 460 IPR000225 GO:0005515
Pral4079g00004 682 Gene3D - 520 656 IPR011989 -
Pral4079g00004 682 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Pral4079g00004 682 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Pral4079g00004 682 Gene3D - 367 518 IPR011989 -
Pral4079g00004 682 SUPERFAMILY ARM repeat 375 640 IPR016024 -
Pral4079g00004 682 PANTHER U BOX DOMAIN-CONTAINING 40 652 - -
Pral4079g00004 682 Coils Coil 208 228 - -
Pral4079g00004 682 CDD RING-Ubox_PUB 274 326 IPR045210 -
Pral4079g00004 682 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Pral4079g00004 682 FunFam RING-type E3 ubiquitin transferase 268 346 - -
Pral4079g00004 682 CDD MLKL_NTD 52 141 - -
Pral4079g00004 682 SMART arm_5 403 447 IPR000225 GO:0005515
Pral4079g00004 682 SUPERFAMILY RING/U-box 272 346 - -
Pral4079g00004 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 348 IPR013083 -
Pral4079g00004 682 Pfam Armadillo/beta-catenin-like repeat 404 446 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4079g00004 Pral-Chr4079 29688 32322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4079g00004 9 680 U-box Gene Family AT5G01830 58.641 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4079g00004 - - qsa:O6P43_026334 937.176