Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4079g00003 ATGGCGATTCCTCCCCAAATCTTCCCTCCTCGTAAACGACGACCGTCGGCGGCGTCGTTTATCTCTCCCAAACTCACAGAGCTCGATCTCCTTCACTCTCTGCTTCACCTATCCCGTGAGATTTCCTCTCTCAAACCCATCCAATTCCTTCTCAAACGCAATTCCTCTTCCATCATTCGCAAAACCAATCTCCTTGCTGTTCTCTTCGAAGAGTTGATTAGAAGTTCGGTTTCTCTTTCCTTTCAATCTGCCATTCTGTGTTTCGAAGAAATGTACATAGTTCTACAGAGAATCAGGACCTTGATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATCAATTGCGGATAATCTTCACAAACTCACTGCGGATTTATCCACGCTTCTGGATATATTCCCGGTGACGGAACTTGATTTAAGCGAGGACGTACGGGAGCTTGTGATCCTCATCAGAAAACAATGCACTGAATCCAAGGCTTTTGTGGATCCAAAGGACAACGAGCTCAGGCGTGAGGTTGTCACGATGCTTGATCGTATTAAACGAGAGATCGTCCCCGATCATTCCAAGCTTGCAGATATCTTCGGGAGGTTGGAAATCCGAGATTCTTCTAGCTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCAGAATCGAACCGATGAGCAATGCAAATCCGAGCTCGTCGCTTTGATTGGACTCGTCCGTTACGCTAAATGCGTTCTTTTCGAAGCTTCCACGCCATCATCTTCTTCTTCTGATGATGTACCGCGGCGGAAACAGCCGTCGGAGATCGTTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTCGAGCTCATGCGCGACCCTGTTGTCGTGGCAACAGGACAGACGTATGACCGTGAGTCCATCAAACTGTGGCTCGAATCAGGGCATAACACGTGTCCCAAGACTGGTCAAACTATGGCCCACACAGACCTCATCCCCAACCGTGCATTGAAGAATCTCATTGCAATGTGGTGCCGCGAGCAGAAGATATTTTTTGAAACCGCGGGCGGTAACGACAGGCCTCACGGCGTTATCATCAACAAAGCCGCCTTAGAAGCTACTAGAATGACGGCGTCATTCTTAGTCAACAAATTGTCTCTTTCTCCGTCCATGGAAGCCGCAAACGCCGTCGTTTATGAGCTTCGTGTGCTGGCAAAAACAGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCTCTTAGTTAGCTACTTGAGCTTCAGCAATCCAAACCTCCAAGTTAACGCCGTCACGACCATCCTCAACCTTTCCATCCTCGAAGCGAACAAAACAAGGATATTGGAGACTGACGGAGCATTAACCGGCGTCGTCGAGGTTCTTCGCTCAGGAACCACGTGGGAGGCGAAGGCCAACGCCGCCGCCACAATATTCAGCTTATCTGGCGTTCCCCCTTACAGGAAAAGACTAGGGAGGAAGACACGTGTCACGAGGGGATTGATTGACTTGGCAAGGTGTGGGCCCACAAGTGCCAAGAGGGATGCTCTGCTGGCAATTTTGACCCTGGCGACGGATAGAGAGACGGTGGCGAGGCTGGTGGAAGCTGGGGTTGTGGAGATGACGGCGGAAGTGATGGACGGGTTACCGGAAGAGGCGGTGACTATTCTTGAGGTGGTTGTGAAGCGGGGTGGGTTGGTGGCCGTCGCCGCTGCGTTCGGCAGCATTAAGAAATTGGGGGCTATATTGAGGGAAGGTTCTGATAGGGCCAGGGAGAGTGCGGCGGCGACGCTGGCCACAATGTGTCGTAAAGGGGGGTCGGACATAGTGGAGGAGTTGGCCTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCCATTGGAACTGTAAGAGGGAAACGAAAAGCCGCCACGTTGTTGAGGGCTCTCCGGCGATGGGCTGCCGGTTTGGACGGTGCAGGGTTAACGGAAGGATTTTCAACGGCCATCCCTTCGTCAGCAACGATGGTTTCAACTCAATAA 2037 0.5174 MAIPPQIFPPRKRRPSAASFISPKLTELDLLHSLLHLSREISSLKPIQFLLKRNSSSIIRKTNLLAVLFEELIRSSVSLSFQSAILCFEEMYIVLQRIRTLIEDCSNGSKMALLMQNESIADNLHKLTADLSTLLDIFPVTELDLSEDVRELVILIRKQCTESKAFVDPKDNELRREVVTMLDRIKREIVPDHSKLADIFGRLEIRDSSSCRAEIESLEEEIQNRTDEQCKSELVALIGLVRYAKCVLFEASTPSSSSSDDVPRRKQPSEIVVPADFRCPITLELMRDPVVVATGQTYDRESIKLWLESGHNTCPKTGQTMAHTDLIPNRALKNLIAMWCREQKIFFETAGGNDRPHGVIINKAALEATRMTASFLVNKLSLSPSMEAANAVVYELRVLAKTDSDSRACIAEAGAIPLLVSYLSFSNPNLQVNAVTTILNLSILEANKTRILETDGALTGVVEVLRSGTTWEAKANAAATIFSLSGVPPYRKRLGRKTRVTRGLIDLARCGPTSAKRDALLAILTLATDRETVARLVEAGVVEMTAEVMDGLPEEAVTILEVVVKRGGLVAVAAAFGSIKKLGAILREGSDRARESAAATLATMCRKGGSDIVEELASLPGIERVIWELMAIGTVRGKRKAATLLRALRRWAAGLDGAGLTEGFSTAIPSSATMVSTQ 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4079g00003 678 PANTHER U BOX DOMAIN-CONTAINING 40 648 - -
Pral4079g00003 678 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Pral4079g00003 678 SMART arm_5 403 443 IPR000225 GO:0005515
Pral4079g00003 678 Pfam Armadillo/beta-catenin-like repeat 404 442 IPR000225 GO:0005515
Pral4079g00003 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 348 IPR013083 -
Pral4079g00003 678 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Pral4079g00003 678 Coils Coil 208 228 - -
Pral4079g00003 678 CDD RING-Ubox_PUB 274 326 IPR045210 -
Pral4079g00003 678 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Pral4079g00003 678 SUPERFAMILY ARM repeat 375 648 IPR016024 -
Pral4079g00003 678 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Pral4079g00003 678 CDD MLKL_NTD 52 141 - -
Pral4079g00003 678 Gene3D - 360 655 IPR011989 -
Pral4079g00003 678 SUPERFAMILY RING/U-box 272 346 - -
Pral4079g00003 678 FunFam RING-type E3 ubiquitin transferase 268 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4079g00003 Pral-Chr4079 29688 32322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4079g00003 9 676 U-box Gene Family AT5G01830 58.841 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4079g00003 - - qsa:O6P43_026334 937.562