Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4078g00020 ATGCATCGCCGTCTTCTCGACGCCGGGCTAAGTGTGTCTCCGGCATATAGGAATAAGACCCATGAATCGTTCGTGCGAGATGTAAACTTCGACGCGAACATGGTGATCATACTGGCGGCTTTGTTGTGCGCATTAATATGCGCGCTTGGGTTGAACTCGATGGTGCGATGTGTGTTGCGTTGTAGCCAAAGATTTTCCACAGAGACCACAGAACAAACAGCTGCCAGGCTTGCCTCAACGGGCCTGAAGAAACGTCACCTGAGCCGGATTCCGGTGAAAGAGTACGGGCCCGGGGCGAACATACCGGCGACGGAGTGCCCGATATGCCTCGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATAGACACATGGCTTTTGTCACATTCTTCTTGCCCCAACTGTCGCCATTCGCTGCTAGAGAAATCCACAAATCCGAGTTTGAATTCGAATGGGAGGAGTGAAGTAGGAGAACCCGCCGGAGCTCAGGCACCGGCAGATGGGCCCGGCAACATGCAAGTCCACGCCCTGGTCGTCGACGAGCAGGCAAGTTGA 591 0.5431 MHRRLLDAGLSVSPAYRNKTHESFVRDVNFDANMVIILAALLCALICALGLNSMVRCVLRCSQRFSTETTEQTAARLASTGLKKRHLSRIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKSTNPSLNSNGRSEVGEPAGAQAPADGPGNMQVHALVVDEQAS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4078g00020 196 SMART ring_2 106 147 IPR001841 -
Pral4078g00020 196 SUPERFAMILY RING/U-box 99 156 - -
Pral4078g00020 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 153 IPR013083 -
Pral4078g00020 196 PANTHER RING-H2 FINGER PROTEIN ATL78 23 166 IPR044602 GO:0016567|GO:0016740
Pral4078g00020 196 MobiDBLite consensus disorder prediction 155 185 - -
Pral4078g00020 196 CDD RING-H2_EL5-like 105 148 - -
Pral4078g00020 196 Pfam Ring finger domain 105 148 IPR001841 -
Pral4078g00020 196 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4078g00020 Pral-Chr4078 281594 283488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4078g00020 4 158 C3H Transcription Factor Family AT3G10910 57.927 4.43e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4078g00020 K19040 - cit:102625542 243.047