Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4078g00018 ATGGTGTCAAGAACTTGCATGAATGCGGCTTGTGCCACCTCGAAGTCGGTTCAGTGGCGGAAAGGATGGCCCTTGAGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGCTCTGCTTATGAGCAATCAACATTTTGCTATGTGTTCCACTCAAAGGATTCTGGTTGGAGGGAGTGCGCATCGTGTGGCAAGCGTCTTCATTGTGGATGCATTGCTTCTCGAAATTTGCTTGAGCTGCTAGACACTGGTGGTGTAAGCTGCGTAAGTTGTGCGAGAGATTCAGGACAACCTAGTTCAACTATGGAAAAGCCTGATGGATCTGGTACATCAAAAGTTGAAATTGGAAGTGAACTACAATGCTCATTGGTTTCTAACCAATTAAAAGGAAGCAATGTTGAGAAAGTGAGAGGGGTGCGGGTAGGGGATTATGCAGAGAATGATGGGCTTAGGAGTTGGCTCCAACATCATAATGGTGCCACAAATGGGCCTCCTATGCGATTAAAACAAGAAGTTATGCCTTTTATTGGGGAACTTGGAAGCACTTCAATATCACAATTCCATCCAGAGCCAAATGGATCATCCAAGGCTGTCAAAGTTGACAATTGCAAGACAGATGTAGAAATAAGAGATATGTATGAATCATTGGCTCAAACAAATTTGAGTATGACTCTTGGTGCTCCTTTAGGTAATTCAAACTCCTTTCGTAATGATGCTTTTGAGGAAAGGGAGCAGAGTAAGACATCATCTTCAACATTGCCGGGGTCCAGATCTCGCCATCTCTTACCCAAGCCCCCTAGGGCAACGCTCCCCATAGGCTTGGAGGCAAATGCAGGGATAGTATCTCAAATTCGTGTTGCCAGGCCACCTGCTGAAGGACGTGGAAGGAATCAGCTACTTCCCCGTTATTGGCCTAGGATCACTGATCAGGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTCCCACTATTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCCTGGTTCTTCCAAAGGCTTGTGCTGAAACATATTTTCCTCCTATCTCTCAGCCAGAGGGCCTTCCCTTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTATTCCAGTTTAGATTCTGGCCAAACAATAACAGCAGAATGTATGTTCTAGAGGGGGTAACGCCCTGCATTCAGTCTATGCAGTTGCAAGCTGGGGATACTGTGACATTTAGTCGTATGGACCCTGAGGGAAAACTTATAATGGGGTTTCGGAAGGCTACAAATTCTTCTGCAGTACAGGAATCTCATCCATCTAATATTCCCAATGGCAATCGTTCAAGTGAAACTTCCTATCCCGGTGTTTATGAGAATTTGCCTGTATTAAGTGGCTACTCTGGCCTTCTTCAATCCTTAAAAGGAAGTTCAGAAACCCAACTAAATGCATTGACTAAAAAGTGGAATTCAGCTTGTGGGGAGATGAATTGGCATAATATTGAGATGCCTGAAGGCAGGAAAAGAGAAGGATTGCTTCTGCCACCAGCATTGGTTCCGGAGAAGAAAAAGACTCGTAATATTGGGCCAAAAAGTAAGAGATTGCTTATTGACAGCCAGGATGCACTGGAGCTCAAACTAACCTGGGAGGAGGCTCAGGATTTGCTCCGTCCACCACCAGCAGTTAAGCCAAGCATAGTCATGATTGAAGACCATGTATTTGAAGAATATGAAGAACCTCCTATCTTTGGGAAGAGAAGTATATTTGTGGCCCGTTCAACAGGGATGCATGAACAATGGACTCAATGCGATAGTTGCTCAAAATGGCGAAAGTTGCCTGTGGATGTACTTGTTCCCCCTAAGTGGACATGCGGGGACAATTCATGGGATCAGAGCAGGTGTTCATGTTCTGCCCCCAGTGAACTCACCCCAAGGGAACTGGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAAAATGGCGGCTAGCCACAGGCTGTCCCTGGAGCAGCATGAATCTTCTGGACTGGATGCTTTGGCCAATGCTGCAATACTTGGAGACGATGCAGGTGATTCTAGCAAGACGCAAGTTGCTACCACTACAAAACACCCTCGGCATAGACCTGGCTGCTCCTGCATTGTCTGCATCCAGCCACCCAGTGGAAAGGGAAAACACAAACCTACGTGCACTTGCAATGTATGCATGACAGTTAAACGTCGGTTTAAGACCCTGATGATGCGAAAGAAGAAACGTCAGTCTGAACGTGAAGCAGAGATTGCTCAGAGAAACCAGCAATCAGGTGGGCCGAGGGATGAATCAGAAGTGGAAAGCACCTCTAGAAATTTAACTCCAGCTGATGGTTCTGAGACTGAAGCGAGGCCACCAAATGAGTTGGACTCAAGAAGTCAAACCGATGTGGCTGAAACTAGCAAGGCACAGTTAGACTTGAATTGCGATCCCGATCGAAATGACATGCAAGCTGGCTCAAACAGTGTCAGCATGATGAGTCTACTTCAAGAAGCAAATCTCCCTTTGGAGACATATCTGAAGCAAAATGGTCTTGCTAGTTTGGCATCAGAGCAACAAGCAAATTCAGCTTCCAATGTGCAGGCGCAGACCACTAACGAAAGTGAGGGAAGACCCAACGAGGATTGTTGTGCTGCTTCTGATGTTAAGGAGCAAGAAAGTAGTCATGAACAGAACAGTGGTGAAGACAAAAGCGAAAATAATCCCCCTTCATGA 2742 0.4559 MVSRTCMNAACATSKSVQWRKGWPLRSGEFADLCDKCGSAYEQSTFCYVFHSKDSGWRECASCGKRLHCGCIASRNLLELLDTGGVSCVSCARDSGQPSSTMEKPDGSGTSKVEIGSELQCSLVSNQLKGSNVEKVRGVRVGDYAENDGLRSWLQHHNGATNGPPMRLKQEVMPFIGELGSTSISQFHPEPNGSSKAVKVDNCKTDVEIRDMYESLAQTNLSMTLGAPLGNSNSFRNDAFEEREQSKTSSSTLPGSRSRHLLPKPPRATLPIGLEANAGIVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSSAVQESHPSNIPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSETQLNALTKKWNSACGEMNWHNIEMPEGRKREGLLLPPALVPEKKKTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSIFVARSTGMHEQWTQCDSCSKWRKLPVDVLVPPKWTCGDNSWDQSRCSCSAPSELTPRELDNLLRLNKEFKKQKMAASHRLSLEQHESSGLDALANAAILGDDAGDSSKTQVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSGGPRDESEVESTSRNLTPADGSETEARPPNELDSRSQTDVAETSKAQLDLNCDPDRNDMQAGSNSVSMMSLLQEANLPLETYLKQNGLASLASEQQANSASNVQAQTTNESEGRPNEDCCAASDVKEQESSHEQNSGEDKSENNPPS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4078g00018 913 MobiDBLite consensus disorder prediction 883 905 - -
Pral4078g00018 913 MobiDBLite consensus disorder prediction 687 707 - -
Pral4078g00018 913 MobiDBLite consensus disorder prediction 860 880 - -
Pral4078g00018 913 MobiDBLite consensus disorder prediction 745 828 - -
Pral4078g00018 913 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677
Pral4078g00018 913 MobiDBLite consensus disorder prediction 759 786 - -
Pral4078g00018 913 MobiDBLite consensus disorder prediction 240 268 - -
Pral4078g00018 913 ProSiteProfiles Zinc finger CW-type profile. 592 642 IPR011124 GO:0008270
Pral4078g00018 913 Gene3D - 305 432 IPR015300 -
Pral4078g00018 913 SMART B3_2 327 427 IPR003340 GO:0003677
Pral4078g00018 913 Gene3D - 595 651 - -
Pral4078g00018 913 SUPERFAMILY DNA-binding pseudobarrel domain 325 427 IPR015300 -
Pral4078g00018 913 MobiDBLite consensus disorder prediction 860 913 - -
Pral4078g00018 913 Pfam CW-type Zinc Finger 597 639 IPR011124 GO:0008270
Pral4078g00018 913 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 865 - -
Pral4078g00018 913 Pfam B3 DNA binding domain 327 426 IPR003340 GO:0003677
Pral4078g00018 913 CDD B3_DNA 325 426 IPR003340 GO:0003677
Pral4078g00018 913 FunFam B3 domain-containing transcription repressor VAL1 305 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4078g00018 Pral-Chr4078 261686 268790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4078g00018 4 864 B3 DNA Binding Superfamily AT4G32010 50.693 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4078g00018 B3 3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4078g00018 K09287 - gmx:100778833 1457.58