Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4078g00017 ATGGAAGCTGAAGAATTGAGTTTGAAAATGGTGTCAAGAACTTGCATGAATGCGGCTTGTGCCACCTCGAAGTCGGTTCAGTGGCGGAAAGGATGGCCCTTGAGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGCTCTGCTTATGAGCAATCAACATTTTGCTATGTGTTCCACTCAAAGGATTCTGGTTGGAGGGAGTGCGCATCGTGTGGCAAGCGTCTTCATTGTGGATGCATTGCTTCTCGAAATTTGCTTGAGCTGCTAGACACTGGTGGTGTAAGCTGCGTAAGTTGTGCGAGAGATTCAGGACAACCTAGTTCAACTATGGAAAAGCCTGATGGATCTGGTACATCAAAAGTTGAAATTGGAAGTGAACTACAATGCTCATTGGTTTCTAACCAATTAAAAGGAAGCAATGTTGAGAAAGTGAGAGGGGTGCGGGTAGGGGATTATGCAGAGAATGATGGGCTTAGGAGTTGGCTCCAACATCATAATGGTGCCACAAATGGGCCTCCTATGCGATTAAAACAAGAAGTTATGCCTTTTATTGGGGAACTTGGAAGCACTTCAATATCACAATTCCATCCAGAGCCAAATGGATCATCCAAGGCTGTCAAAGTTGACAATTGCAAGACAGATGTAGAAATAAGAGATATGTATGAATCATTGGCTCAAACAAATTTGAGTATGACTCTTGGTGCTCCTTTAGGTAATTCAAACTCCTTTCGTAATGATGCTTTTGAGGAAAGGGAGCAGAGTAAGACATCATCTTCAACATTGCCGGGGTCCAGATCTCGCCATCTCTTACCCAAGCCCCCTAGGGCAACGCTCCCCATAGGCTTGGAGGCAAATGCAGGGATAGTATCTCAAATTCGTGTTGCCAGGCCACCTGCTGAAGGACGTGGAAGGAATCAGCTACTTCCCCGTTATTGGCCTAGGATCACTGATCAGGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTCCCACTATTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCCTGGTTCTTCCAAAGGCTTGTGCTGAAACATATTTTCCTCCTATCTCTCAGCCAGAGGGCCTTCCCTTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTATTCCAGTTTAGATTCTGGCCAAACAATAACAGCAGAATGTATGTTCTAGAGGGGGTAACGCCCTGCATTCAGTCTATGCAGTTGCAAGCTGGGGATACTGTGACATTTAGTCGTATGGACCCTGAGGGAAAACTTATAATGGGGTTTCGGAAGGCTACAAATTCTTCTGCAGTACAGGAATCTCATCCATCTAATATTCCCAATGGCAATCGTTCAAGTGAAACTTCCTATCCCGGTGTTTATGAGAATTTGCCTGTATTAAGTGGCTACTCTGGCCTTCTTCAATCCTTAAAAGGAAGTTCAGAAACCCAACTAAATGCATTGACTAAAAAGTGGAATTCAGCTTGTGGGGAGATGAATTGGCATAATATTGAGATGCCTGAAGGCAGGAAAAGAGAAGGATTGCTTCTGCCACCAGCATTGGTTCCGGAGAAGAAAAAGACTCGTAATATTGGGCCAAAAAGTAAGAGATTGCTTATTGACAGCCAGGATGCACTGGAGCTCAAACTAACCTGGGAGGAGGCTCAGGATTTGCTCCGTCCACCACCAGCAGTTAAGCCAAGCATAGTCATGATTGAAGACCATGTATTTGAAGAATATGAAGAACCTCCTATCTTTGGGAAGAGAAGTATATTTGTGGCCCGTTCAACAGGGATGCATGAACAATGGACTCAATGCGATAGTTGCTCAAAATGGCGAAAGTTGCCTGTGGATGTACTTGTTCCCCCTAAGTGGACATGCGGGGACAATTCATGGGATCAGAGCAGGTGTTCATGTTCTGCCCCCAGTGAACTCACCCCAAGGGAACTGGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAAAATGGCGGCTAGCCACAGGCTGTCCCTGGAGCAGCATGAATCTTCTGGACTGGATGCTTTGGCCAATGCTGCAATACTTGGAGACGATGCAGGTGATTCTAGCAAGACGCAAGTTGCTACCACTACAAAACACCCTCGGCATAGACCTGGCTGCTCCTGCATTGTCTGCATCCAGCCACCCAGTGGAAAGGGAAAACACAAACCTACGTGCACTTGCAATGTATGCATGACAGTTAAACGTCGGTTTAAGACCCTGATGATGCGAAAGAAGAAACGTCAGTCTGAACGTGAAGCAGAGATTGCTCAGAGAAACCAGCAATCAGGTGGGCCGAGGGATGAATCAGAAGTGGAAAGCACCTCTAGAAATTTAACTCCAGCTGATGGTTCTGAGACTGAAGCGAGGCCACCAAATGAGTTGGACTCAAGAAGTCAAACCGATGTGGCTGAAACTAGCAAGGCACAGTTAGACTTGAATTGCGATCCCGATCGAAATGACATGCAAGCTGGCTCAAACAGTGTCAGCATGATGAGTCTACTTCAAGAAGCAAATCTCCCTTTGGAGACATATCTGAAGCAAAATGGTCTTGCTAGTTTGGCATCAGAGCAACAAGCAAATTCAGCTTCCAATGTGCAGGCGCAGACCACTAACGAAAGTGAGGGAAGACCCAACGAGGATTGTTGTGCTGCTTCTGATGTTAAGGAGCAAGAAAGTAGTCATGAACAGAACAGTGGTGAAGACAAAAGCGAAAATAATCCCCCTTCATGA 2769 0.4547 MEAEELSLKMVSRTCMNAACATSKSVQWRKGWPLRSGEFADLCDKCGSAYEQSTFCYVFHSKDSGWRECASCGKRLHCGCIASRNLLELLDTGGVSCVSCARDSGQPSSTMEKPDGSGTSKVEIGSELQCSLVSNQLKGSNVEKVRGVRVGDYAENDGLRSWLQHHNGATNGPPMRLKQEVMPFIGELGSTSISQFHPEPNGSSKAVKVDNCKTDVEIRDMYESLAQTNLSMTLGAPLGNSNSFRNDAFEEREQSKTSSSTLPGSRSRHLLPKPPRATLPIGLEANAGIVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSSAVQESHPSNIPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSETQLNALTKKWNSACGEMNWHNIEMPEGRKREGLLLPPALVPEKKKTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSIFVARSTGMHEQWTQCDSCSKWRKLPVDVLVPPKWTCGDNSWDQSRCSCSAPSELTPRELDNLLRLNKEFKKQKMAASHRLSLEQHESSGLDALANAAILGDDAGDSSKTQVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSGGPRDESEVESTSRNLTPADGSETEARPPNELDSRSQTDVAETSKAQLDLNCDPDRNDMQAGSNSVSMMSLLQEANLPLETYLKQNGLASLASEQQANSASNVQAQTTNESEGRPNEDCCAASDVKEQESSHEQNSGEDKSENNPPS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4078g00017 922 CDD B3_DNA 334 435 IPR003340 GO:0003677
Pral4078g00017 922 Gene3D - 604 660 - -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 441 461 - -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 249 277 - -
Pral4078g00017 922 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 874 - -
Pral4078g00017 922 SUPERFAMILY DNA-binding pseudobarrel domain 334 436 IPR015300 -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 696 716 - -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 754 837 - -
Pral4078g00017 922 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Pral4078g00017 922 MobiDBLite consensus disorder prediction 869 922 - -
Pral4078g00017 922 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Pral4078g00017 922 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Pral4078g00017 922 Gene3D - 314 441 IPR015300 -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 768 795 - -
Pral4078g00017 922 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Pral4078g00017 922 MobiDBLite consensus disorder prediction 892 914 - -
Pral4078g00017 922 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Pral4078g00017 922 MobiDBLite consensus disorder prediction 869 889 - -
Pral4078g00017 922 SMART B3_2 336 436 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4078g00017 Pral-Chr4078 261686 268790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4078g00017 13 873 B3 DNA Binding Superfamily AT4G32010 50.693 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4078g00017 B3 3.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4078g00017 K09287 - gmx:100778833 1457.58