Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4075g00017 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCCCCCGACCCCGTCACTCCTCCGGTGACTTCCAGCTCCAATCGATACGGTATCCCATCTGCTTCTAATATTATTCAGGCGCCCTTGTCTTTGTTGTTGGAGCATTTAGGGATTCTTCGAAGCAGGTCTAATCAACAAGAGACTGAGCCCTTAATCAACAACAATAGACTGTCTTCTGGATTCCGTGATGCTTTACGGAATCGCCTTGGCGAGTCCTCCGTCATTCCTAATGATGGAGAGGTGTCTATTAGTATTATTGGGGCTGGGGAGCAACGACTTGATAGGGAAGGCGAAGTGAGGGAAGTTCTGTCCCAGAATGAAGTATCGATACCGGCGCAACCCTTGGCTGGGATGCCCTCTGCGACGGTTCCTCCTGCTCCGGGCAATCAGGAACGTTCAAGAACTGAGCATGTTGCAGAAGAGGGCGTTTCCCAATCTGTGAATGCAAATTCTGATGCTGAGGCTGGTGATGGAGTTGGTGCTAACGCTAGGGATTCTTCATCCCAGAGGTATGATATTCAGCAGGCTGCTCGCTGGATTGAGCAGGTCCTGCCTTTTTCTTTGCTGTTGCTGGTCGTCTTCATTCGGCAGCATTTGCAAGGTTTTTTTGTTACAATTTGGGTTACTGCTGTCCTTTTCAAGTCAAATGACATTTTGCGGAAGCAGACAGCTCTAAAGGGAGAGAGAAAATTTCCTGTATTGATTACCATTTCTATTGCATTTACACTGCACGTGGTTGGGGTATATTGGTGGTGTCAGAATAATGACATGCTATACCCGTTGGCTATGCTTCCTCCCAAAGTCATACCTCCATTTTGGCATGTTATTTTCATCATCACAGTGAATGATGCTTTGGTCCGCCAGGCAGGAATGGTATTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGGCCGAAATTATCGTAAGCAGGGCCAAATGTTGACTCTAGTTGAGTACCTACTCCTCCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGATTCTTCTTGAACAAGGAATATGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTTAAGCTGACGTCAGTCATTGAGAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCGACATCGGAACAGGTGAATGCCGTTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATACCCCAATCTTACTCTCTTGTAATCACATCTTCTGTGAAGAATGTGTATCAGAATGGTTTGAGAGGGAAAGGACCTGCCCCTTGTGCAGGGCGTTGGTGAAACCTGCTGATCTTAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTAA 1425 0.4575 MIRVRAITRMEASPDPVTPPVTSSSNRYGIPSASNIIQAPLSLLLEHLGILRSRSNQQETEPLINNNRLSSGFRDALRNRLGESSVIPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSIPAQPLAGMPSATVPPAPGNQERSRTEHVAEEGVSQSVNANSDAEAGDGVGANARDSSSQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKFPVLITISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFIITVNDALVRQAGMVFKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFAAVKALSRKEVHYGAYATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4075g00017 474 Pfam Zinc finger, C3HC4 type (RING finger) 411 454 - -
Pral4075g00017 474 CDD RING-HC_RNFT1-like 411 451 - -
Pral4075g00017 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 461 IPR013083 -
Pral4075g00017 474 ProSiteProfiles Zinc finger RING-type profile. 413 451 IPR001841 -
Pral4075g00017 474 SMART ring_2 413 450 IPR001841 -
Pral4075g00017 474 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 474 IPR044235 GO:0061630|GO:1904294
Pral4075g00017 474 SUPERFAMILY RING/U-box 405 456 - -
Pral4075g00017 474 ProSitePatterns Zinc finger RING-type signature. 428 437 IPR017907 -
Pral4075g00017 474 MobiDBLite consensus disorder prediction 122 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4075g00017 Pral-Chr4075 134392 139412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4075g00017 24 474 C3H Transcription Factor Family AT5G01960 67.991 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4075g00017 - K22379 csav:115694696 654.44