Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4074g00028 ATGGTGCGTATGAGTTTGATTAAGAACTTGCATGATGGCACAGACTGTTGGAGTATAATAGTGAGGGTTATGCGCAAGTGGAACATCTACAAAAAAAATACTCCTGCTGATGTTTTTGGCGTGACCATGCTGTTATTGGATGAGGAGGGTACTACCATTCAAGCGACTGTGCTAAATAGGAATATCATGGCCAGATACAAAACTAATATTGTGGAAGGAAATACTTACTTATTCGCTAACTTCATTGTGTCACAAAATGGAAATCAATACAGAGCTTCAACACACCCTTTCAAGATCACTTTCACTCCACAAACTTTCTTTGCAGACCACAACGTATCACTTCCAGCATATTCATATTCATTCTTCCCTATCTCTGAGATTTTGAAGGCCACTCCAGAGCACCACGTTCAACACCTTTTTGATGTGATGGCATTTGTGAAAGCCATGGGTACGCTTGAAGAGTTCCGTAGGGATAATGAAACTAAGTCTAAACTTCGCATGATATTGACTGATGCCCGGGAGAATGATATTGAGTGCGTACTATTTGATGACTGTGCAATTGATGCTTTTATGGCTCAGTTACAGAACACAGAAACACCTGTTGTTGGCCTATTCAATCTCGCTAGAATTGGTTTCTCTGAAGATGGTGTTGGTGAGAGTTTTGTTGTTAAATGCACGGTTAAGAAGCTAGAAACATATCACGGATGGACCTATGATGGATGTTCAAAGTGTGTTGCGAAAACCAGACTCGAGGGTACATCAGTTACGTGCCTGATCTGCAAGAAAGTTCCAGATGCCATAAAACCAAAGCTTCGCATTCATTACATGGTGGAAGACGATACTGGATCTGCTTCATTAATCTTTTGGGATAAACAAGCTGTTCAATTGATTAACAAGACAGCCACAGAGTTGAAACTTCTCATGCAACAGGATAATCACCCAGCATATGATTTTCCAGATGAGCTGGAAGATCCTGTAGGAAAGGTTCTACTAGTGAAAATGAAGCTCAATGAGTACAACAAAAAACATCCAACATCTGCAATTAGTGTAGGCCAGTTTGCTATTTGTGAAGACCTCATGGACCAGTTTATGGATGCAAATGTTGAAGTCGGTGAAGTTAATGCCCGTAATGCGAACAATGACAGCCAGGATGTTCCTTCGTTGGTTGAAATCACTGATAATCAGGATAGCCATGAAAATGTGTCACCCGTTATCCCTCAGCCTGCTGCACCACAGAACAATGAACTTGAAGACGTCACTCTTGTCGAGCTTGCTAACCAGGTCACACCAGTAACTAATAGAGTGAGGAGAAGGTCGGCGATCAAGAGAAATGTTGGAGTGGATGTTTCTGCCAGTTCTTCACAGAGCTTGCCTACTAAAGATTCAGAAGCAGAAAGAGTTTATAAGGTCATCAAGAAGGAGAAGTAA 1428 0.4139 MVRMSLIKNLHDGTDCWSIIVRVMRKWNIYKKNTPADVFGVTMLLLDEEGTTIQATVLNRNIMARYKTNIVEGNTYLFANFIVSQNGNQYRASTHPFKITFTPQTFFADHNVSLPAYSYSFFPISEILKATPEHHVQHLFDVMAFVKAMGTLEEFRRDNETKSKLRMILTDARENDIECVLFDDCAIDAFMAQLQNTETPVVGLFNLARIGFSEDGVGESFVVKCTVKKLETYHGWTYDGCSKCVAKTRLEGTSVTCLICKKVPDAIKPKLRIHYMVEDDTGSASLIFWDKQAVQLINKTATELKLLMQQDNHPAYDFPDELEDPVGKVLLVKMKLNEYNKKHPTSAISVGQFAICEDLMDQFMDANVEVGEVNARNANNDSQDVPSLVEITDNQDSHENVSPVIPQPAAPQNNELEDVTLVELANQVTPVTNRVRRRSAIKRNVGVDVSASSSQSLPTKDSEAERVYKVIKKEK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4074g00028 475 Gene3D - 3 108 IPR012340 -
Pral4074g00028 475 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Pral4074g00028 475 PANTHER OS03G0429900 PROTEIN 220 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4074g00028 475 Pfam Replication factor-A C terminal domain 221 341 IPR013955 -
Pral4074g00028 475 CDD RPA1_DBD_C 210 340 IPR047192 -
Pral4074g00028 475 MobiDBLite consensus disorder prediction 445 475 - -
Pral4074g00028 475 CDD RPA1_DBD_A_like 18 105 - -
Pral4074g00028 475 SUPERFAMILY Nucleic acid-binding proteins 118 204 IPR012340 -
Pral4074g00028 475 MobiDBLite consensus disorder prediction 446 461 - -
Pral4074g00028 475 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Pral4074g00028 475 SUPERFAMILY Nucleic acid-binding proteins 215 342 IPR012340 -
Pral4074g00028 475 Gene3D - 205 361 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4074g00028 Pral-Chr4074 252198 254627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4074g00028 3 227 Core DNA Replication Machinery Family AT5G61000 23.237 9.08e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4074g00028 - - pcin:129317387 358.992