Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00063 ATGACGAGAGGCCATTGCTATGACAAAAATGGAGTGAAGAGAGGTGCGTGGAGTAAGGAGGAGGATGAAAGGTTAAGAGCGTATGTTGAGAGATATGGCCACAGCAATTGGCGTCAGCTCCCCAAACACGCAGGTTTATCAAGGTGTGGAAAGAGTTGCCGACTTCGCTGGCTAAATTACCTTCGTCCGGGCGTGAAGCTGGGAAATTATACCCAGGAAGAAGACGAACTCATCATCAAATTGCATGAACAGCATGGAAATAAATGGTCTTTGATTGCCAAAAGGTTACCAGGGAGAAGTGACAACGAGGTTAAGAACCATTGGCATAGCCACCTAAAGAAGCACGTGGGGTGCAATCATGAGGAAAAATCTGAGTTCAAAACGAAGGCTAGTGGTACTTGTGAAGGAGAAACAACAAAGAATTTCGAACCTGAAAACCCTCTGCTTGGTTTTTCTGCTGCTACCTCCAGTGATGTCTCAGAAAGCTCACCACCCTTTTACAATTCATCTTCAGCCTTTTCCTCAGGAGGATCAGGCGCTGCTAATGTTGCATGGGAAATATTTGACGAATTCGGAGATTTTTGGACCCAACCATTTGTCCCAGAAATATATATGACCAGGATAACCGTTATAGCCT 637 0.4505 MTRGHCYDKNGVKRGAWSKEEDERLRAYVERYGHSNWRQLPKHAGLSRCGKSCRLRWLNYLRPGVKLGNYTQEEDELIIKLHEQHGNKWSLIAKRLPGRSDNEVKNHWHSHLKKHVGCNHEEKSEFKTKASGTCEGETTKNFEPENPLLGFSAATSSDVSESSPPFYNSSSAFSSGGSGAANVAWEIFDEFGDFWTQPFVPEIYMTRITVIA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00063 212 Gene3D - 69 139 - -
Pral4072g00063 212 CDD SANT 69 112 IPR001005 -
Pral4072g00063 212 SMART sant 13 63 IPR001005 -
Pral4072g00063 212 SMART sant 66 114 IPR001005 -
Pral4072g00063 212 CDD SANT 16 61 IPR001005 -
Pral4072g00063 212 Gene3D - 14 66 - -
Pral4072g00063 212 FunFam Transcription factor RAX3 6 67 - -
Pral4072g00063 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 155 - -
Pral4072g00063 212 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4072g00063 212 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pral4072g00063 212 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4072g00063 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4072g00063 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4072g00063 212 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4072g00063 212 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00063 Pral-Chr4072 446391 447619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00063 1 119 MYB Transcription Factor Family AT2G31180 63.866 5.71e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4072g00063 Myb_DNA-binding 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00063 K09422 - qsu:111986407 218.009