Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00060 ATGGTGAGAGGTCCTTTCGTTGACGCTAACGGAGTTAAGAAAGGCGCATGGAGTGAAGAAGAAGACCAGAAGCTCATATCTTATATTCAGACCCATGGCCATCCAAACTGGCGCCAACTCCCCAAGTTAGCAGGCTTGGCAAGATGCGGAAAGAGCTGCAGGCTTCGATGGATGAACTACCTGCGACCAAATCTGAAACGTGGGAACTATACTCCACAAGAGGAGGAGATCATCCTCAAACTACACGAACAACATGGAAACAAGTGGTCCCTGATTGCTGAGAAGTTACCTGGGAGAACAGACAACCATATAAAGAATCATTGGCACAGCCAGCTGAAGAGGCGGTCGAGGGACAGAGGAAAGAGTGATTCTGAGGTGAAAGGCAACAAGTCAGGTCGAAGTAACAATAATAATATGACTAAGCATTCAGAATCTGATATTGTGAAGGCTGTGAGTGAGTTGAATAATATATTTGAAAGCTCATCACTGGACTGTACGGAAACGACGTCGTCGACGCAGGCGGGTCAAGACAACTCTGCTTCCTTCTTGCCTTCCACTGATACAGAATCTAGCACTAAGAATTCCCCAGAAGAATATAATAGCGGGGCTTGCCAGGAAGTTAGTAAATTCCCAGAATTTAGCGGCGATTTCTGGACTGAACCGTTTATATCAGAAGATATATACAGTGAATATTGCTATCCAAATATTGAAGGCGCCGGAGACATGTTTTCATCTGATGGCGCGCTCTTGTTTTTCTAA 759 0.4519 MVRGPFVDANGVKKGAWSEEEDQKLISYIQTHGHPNWRQLPKLAGLARCGKSCRLRWMNYLRPNLKRGNYTPQEEEIILKLHEQHGNKWSLIAEKLPGRTDNHIKNHWHSQLKRRSRDRGKSDSEVKGNKSGRSNNNNMTKHSESDIVKAVSELNNIFESSSLDCTETTSSTQAGQDNSASFLPSTDTESSTKNSPEEYNSGACQEVSKFPEFSGDFWTEPFISEDIYSEYCYPNIEGAGDMFSSDGALLFF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00060 252 CDD SANT 16 61 IPR001005 -
Pral4072g00060 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4072g00060 252 MobiDBLite consensus disorder prediction 100 143 - -
Pral4072g00060 252 SMART sant 13 63 IPR001005 -
Pral4072g00060 252 SMART sant 66 114 IPR001005 -
Pral4072g00060 252 MobiDBLite consensus disorder prediction 129 143 - -
Pral4072g00060 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4072g00060 252 MobiDBLite consensus disorder prediction 167 202 - -
Pral4072g00060 252 Gene3D - 69 146 - -
Pral4072g00060 252 FunFam MYB-related transcription factor 13 66 - -
Pral4072g00060 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4072g00060 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4072g00060 252 Gene3D - 7 67 - -
Pral4072g00060 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 187 - -
Pral4072g00060 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4072g00060 252 MobiDBLite consensus disorder prediction 167 203 - -
Pral4072g00060 252 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral4072g00060 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4072g00060 252 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00060 Pral-Chr4072 428317 429281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00060 1 224 MYB Transcription Factor Family AT1G06180 44.206 7.09e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4072g00060 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00060 K09422 - gmx:100781032 242.276