Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00059 ATGGTGAGAACCCCATACAGCAACCAAAATGGCCTCAGGAAAGGAACATGGACACCAGAAGAAGACATGAAGTTGGTTGCTTATGTTACGAGGTATGGCTGTTGGAATTGGCGACTACTCCCCCAGTTTGCTGGACTGGCGAGGTGTGGAAAGAGTTGCAGGCTTCGGTGGATGAACTATCTAAGACCAGACATCAAAAGAGGGAATTACACTCCACAAGAAGACAACACTATCATCAGACTTCACCAAAAAATGGGTAATAGGTGGTCCAAGATTGCTGCTTGTTTACCAGGAAGAACTGATAACGAAATAAAAAACCATTGGCACACCAATCTCAAGAAGAGGGTTCAAGAAAACTCAGTTGCGCATGAAGAACATAGAGCCCTCAAATCAAGCGATCAAATTTCATTTGAATCAAGGCAAGAGTTCATCGACTCATCAGTCTCTATCAGTACAACCACTGCTCCTTCTCCACAATGTGATTCCATAGCAGATGAGTCCCAGAACTCAAGTACCTTCCAAGAGTCTTCCACAGATACTGCTGGTGGTTTCAGCAGTAATGAAAGTTTGGTTGGGAAAGATTGTTATAACTTGTCTACGCCAGATGCGCTCATTGAGACTATGGGTGGTGGTTTTTGGACGGAGCCGTACATGTTTGACTTTTCCTACGTCCCTCAGGAAGCATTGTTACCTTTGTCCCCTGAATACGAATACGATGCACATCTCTGGGAAAACAATCATGGCTTATTTTGA 753 0.4409 MVRTPYSNQNGLRKGTWTPEEDMKLVAYVTRYGCWNWRLLPQFAGLARCGKSCRLRWMNYLRPDIKRGNYTPQEDNTIIRLHQKMGNRWSKIAACLPGRTDNEIKNHWHTNLKKRVQENSVAHEEHRALKSSDQISFESRQEFIDSSVSISTTTAPSPQCDSIADESQNSSTFQESSTDTAGGFSSNESLVGKDCYNLSTPDALIETMGGGFWTEPYMFDFSYVPQEALLPLSPEYEYDAHLWENNHGLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00059 250 CDD SANT 69 112 IPR001005 -
Pral4072g00059 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4072g00059 250 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4072g00059 250 CDD SANT 16 61 IPR001005 -
Pral4072g00059 250 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4072g00059 250 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral4072g00059 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4072g00059 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4072g00059 250 MobiDBLite consensus disorder prediction 150 184 - -
Pral4072g00059 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 178 - -
Pral4072g00059 250 Gene3D - 14 66 - -
Pral4072g00059 250 Gene3D - 69 139 - -
Pral4072g00059 250 SMART sant 13 63 IPR001005 -
Pral4072g00059 250 SMART sant 66 114 IPR001005 -
Pral4072g00059 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4072g00059 250 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00059 Pral-Chr4072 416310 418421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00059 1 140 MYB Transcription Factor Family AT5G60890 57.857 3.92e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4072g00059 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00059 K09422 - zju:107416948 255.758