Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00029 ATGGAGCCTGTATGTGATCTTTGTAGGGTTGTAAGAGCAGTGGTGTACTGCAAGGCAGATTCTGCTCGTCTCTGTTTGAATTGCGATGGTTGTGTACACTCCGCGAATGATTTGTCACGCCGTCATCCTCGTTCACTCCTGTGTGATCAGTGCAATTCCCAACCCGCAATTGTCCGCTGCTTGTATGACGAAATGTCCGTGTGTCAATCTTGTGACTGGAACCAAAAGGGCTGTTCACGATTGGGCCACAGGTGTCAGGCATTGAGTTCTTATACTGGTTGTCCCTCTTCGGCCGACTTCTCAAAAATATGGTCCTTTGTTTTTGATGCTCCTTCAGGTGGTCTTGGTGTTACTGGTTCTCGATCCTTTACCACATTACCTAGAAAAGACAGCTGCTCCAGCAAGTCTATGGAGCCACCAGATAATGACGCCTCTTTTGATTTGGTGACTGGTAAGGTGAATGAAATAGAACCATGTGTCACATATGATCCTTGGATGGGACAATCTGCTAAGATTATACCACCAAACGCAAATTTCCTGTCCTCGTGCAGAGATCAGCAATTTTCATTTCCTCTTGACTCAGATCTGCAGGCAAAGGGATATCCTAATTTAAAGGATCTTGGGACTGCTAGTGGTGATGATCTCTGCGGAGGCCTCAACATAGAAGATCTTTCATTAGGCTTTGAAAATGATGGTGAAATACTTGATTACACCCAAGAAGCCATCAGATACCATCTTGAGAATGGAGAAGCTGACTATTTATTAATGGAAAAGAACATATCAGTGCCAGAATCTAACGGTCTTATTGAGAATGCCTTAGAGGCATCTTCATCAGTTCAACAAGGTCTAGCCTTTCAATCATCCAGGCCGAGCGAGTCAGGTGACGTGGATCACAGCATCAACAATAATGCCAATCCGATACCCATGAATCTGAGCTGCAACCAAAATGATAATCTAGGATATCCTCATGGTCAAGGGCATCCAAGCATATCAGTTCCATTATCAAGCATTAGTGGTGAAAATAGTACCCCTGATTATCAAGATTCTGGATTATCACCAGCATTCCTGACAGGTATTGGCCAGTGGGAGCCAAATTTTGGGTCCTCGTCCCCACAGGCAAGGGACAGAGCTTTAAGGAGATACAACGAGAAAAAGAAAACCAGGACGTTTAGTAAACAAATAAGATATGCATCTCGCAAGGCAAGAGCTGATACTAGAAAACGGGTGAAAGGTAGATTTGTGAAAGCTGGTGAGGCATATGATTATGATCCTCAAGACACAGGGAACTTCTAA 1293 0.4408 MEPVCDLCRVVRAVVYCKADSARLCLNCDGCVHSANDLSRRHPRSLLCDQCNSQPAIVRCLYDEMSVCQSCDWNQKGCSRLGHRCQALSSYTGCPSSADFSKIWSFVFDAPSGGLGVTGSRSFTTLPRKDSCSSKSMEPPDNDASFDLVTGKVNEIEPCVTYDPWMGQSAKIIPPNANFLSSCRDQQFSFPLDSDLQAKGYPNLKDLGTASGDDLCGGLNIEDLSLGFENDGEILDYTQEAIRYHLENGEADYLLMEKNISVPESNGLIENALEASSSVQQGLAFQSSRPSESGDVDHSINNNANPIPMNLSCNQNDNLGYPHGQGHPSISVPLSSISGENSTPDYQDSGLSPAFLTGIGQWEPNFGSSSPQARDRALRRYNEKKKTRTFSKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPQDTGNF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00029 430 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral4072g00029 430 MobiDBLite consensus disorder prediction 280 322 - -
Pral4072g00029 430 Pfam CCT motif 374 416 IPR010402 GO:0005515
Pral4072g00029 430 MobiDBLite consensus disorder prediction 280 331 - -
Pral4072g00029 430 CDD Bbox1_BBX-like 4 47 - -
Pral4072g00029 430 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
Pral4072g00029 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 419 - -
Pral4072g00029 430 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00029 Pral-Chr4072 159354 161645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00029 1 424 C2C2-CO-like Transcription Factor Family AT3G21880 39.437 3.58e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4072g00029 CCT 1.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00029 - - qsa:O6P43_028700 485.337