Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00018 ATGGGAACACAAGGTCCAGGGAACAACTATGACATGGGAATGGATGCTTTTAATAAGCAGATCGCAGAGGCTGATAAACAGATTGATAAGCTGTCGGGGCTTCTTAAAAAACTTAAGGAAGCCAATGAGGAGTCCAAATCTGTCACAAAAGCTTCAGCCATGAAAGCTATCAAGAAGAGGATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACGTACGGTCAAAGCAAAAATAGAAGCTATAAACAAAGATAATCTAGCCAACAGACAAAAGCCTGGTTGCGAGAAGGGAACTGGTGTTGATAGAGCGAGGATGAACATGACAAATTCTTTGACAAAAAGGTTTAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTGGTAGAGAGAAGAGTTATCACAGTCACGGGAACTAGACCAGATGATGAGACAATTGACCAACTAATAGAAACGGGAAGCAGTGAGCAAATCTTTCAGAAGGCTATGCTAGAAACGGGAAGAGGACAGGTGTTAAATACAGTGGAAGAAATTCAGGAGAGACACGATACTGTTAAGGAAATTGAGAAAAGGCTTCTTGATTTACACCAGATCTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTTAACAATGCAGTCGATCATGTCCAGAGAGGGACATCTGTGCTACAAAATGCTAAGAAACTGCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATACTATTATTGATAGTAGCTGTCATAGTTGTTGGTGTTATCCAACCGTGGAAGAGTAGCAAGGGCGCTTGA 858 0.4044 MGTQGPGNNYDMGMDAFNKQIAEADKQIDKLSGLLKKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKIARTVKAKIEAINKDNLANRQKPGCEKGTGVDRARMNMTNSLTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDQLIETGSSEQIFQKAMLETGRGQVLNTVEEIQERHDTVKEIEKRLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSVLQNAKKLQKNSRKWMCIAIIILLLIVAVIVVGVIQPWKSSKGA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00018 285 FunFam Syntaxin 132 177 277 - -
Pral4072g00018 285 Gene3D - 10 138 - -
Pral4072g00018 285 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 184 246 IPR000727 -
Pral4072g00018 285 SMART SynN_4 9 135 IPR006011 GO:0016020
Pral4072g00018 285 FunFam Syntaxin 132 9 138 - -
Pral4072g00018 285 SUPERFAMILY t-snare proteins 11 239 IPR010989 GO:0016020|GO:0016192
Pral4072g00018 285 Pfam Syntaxin 17 219 IPR006011 GO:0016020
Pral4072g00018 285 PANTHER SYNTAXIN 14 264 IPR045242 -
Pral4072g00018 285 CDD SNARE_syntaxin1-like 183 244 - -
Pral4072g00018 285 SMART tSNARE_6 179 246 IPR000727 -
Pral4072g00018 285 Pfam SNARE domain 220 272 IPR000727 -
Pral4072g00018 285 Gene3D - 177 277 - -
Pral4072g00018 285 CDD SynN 14 171 IPR006011 GO:0016020
Pral4072g00018 285 Coils Coil 14 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00018 Pral-Chr4072 96646 100507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00018 4 285 SNARE and Associated Proteins AT3G03800 62.057 3.33e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00018 K08486 - gmx:100800991 469.159