Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00017 ATGAACGACCTGCTCTCTGATTCATTTGTTGGCGACAGCAAAGGTCAGCCTTCTCGACAGAGTGATATTGAGATGGGAACACAAGGTCCAGGGAACAACTATGACATGGGAATGGATGCTTTTAATAAGCAGATCGCAGAGGCTGATAAACAGATTGATAAGCTGTCGGGGCTTCTTAAAAAACTTAAGGAAGCCAATGAGGAGTCCAAATCTGTCACAAAAGCTTCAGCCATGAAAGCTATCAAGAAGAGGATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACGTACGGTCAAAGCAAAAATAGAAGCTATAAACAAAGATAATCTAGCCAACAGACAAAAGCCTGGTTGCGAGAAGGGAACTGGTGTTGATAGAGCGAGGATGAACATGACAAATTCTTTGACAAAAAGGTTTAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTGGTAGAGAGAAGAGTTATCACAGTCACGGGAACTAGACCAGATGATGAGACAATTGACCAACTAATAGAAACGGGAAGCAGTGAGCAAATCTTTCAGAAGGCTATGCTAGAAACGGGAAGAGGACAGGTGTTAAATACAGTGGAAGAAATTCAGGAGAGACACGATACTGTTAAGGAAATTGAGAAAAGGCTTCTTGATTTACACCAGATCTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTTAACAATGCAGTCGATCATGTCCAGAGAGGGACATCTGTGCTACAAAATGCTAAGAAACTGCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATACTATTATTGATAGTAGCTGTCATAGTTGTTGGTGTTATCCAACCGTGGAAGAGTAGCAAGGGCGCTTGA 930 0.4097 MNDLLSDSFVGDSKGQPSRQSDIEMGTQGPGNNYDMGMDAFNKQIAEADKQIDKLSGLLKKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKIARTVKAKIEAINKDNLANRQKPGCEKGTGVDRARMNMTNSLTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDQLIETGSSEQIFQKAMLETGRGQVLNTVEEIQERHDTVKEIEKRLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSVLQNAKKLQKNSRKWMCIAIIILLLIVAVIVVGVIQPWKSSKGA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00017 309 Gene3D - 34 162 - -
Pral4072g00017 309 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Pral4072g00017 309 SMART SynN_4 33 159 IPR006011 GO:0016020
Pral4072g00017 309 FunFam Syntaxin 132 33 162 - -
Pral4072g00017 309 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Pral4072g00017 309 Pfam SNARE domain 244 296 IPR000727 -
Pral4072g00017 309 MobiDBLite consensus disorder prediction 1 31 - -
Pral4072g00017 309 Gene3D - 201 301 - -
Pral4072g00017 309 FunFam Syntaxin 132 201 301 - -
Pral4072g00017 309 PANTHER SYNTAXIN 38 288 IPR045242 -
Pral4072g00017 309 CDD SynN 38 195 IPR006011 GO:0016020
Pral4072g00017 309 MobiDBLite consensus disorder prediction 1 28 - -
Pral4072g00017 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Pral4072g00017 309 Coils Coil 38 75 - -
Pral4072g00017 309 SMART tSNARE_6 203 270 IPR000727 -
Pral4072g00017 309 CDD SNARE_syntaxin1-like 207 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00017 Pral-Chr4072 96036 100507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00017 1 309 SNARE and Associated Proteins AT3G03800 60.772 1.64e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00017 K08486 - gmx:100807404 504.982