Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00016 ATGAACGACCTGCTCTCTGATTCATTTGTTGGCGACAGCAAAGGTCAGCCTTCTCGACAGAGTGATATTGAGATGGGAACACAAGGTCCAGGGAACAACTATGACATGGGAATGGATGCTTTTAATAAGCAGATCGCAGAGGCTGATAAACAGATTGATAAGCTGTCGGGGCTTCTTAAAAAACTTAAGGAAGCCAATGAGGAGTCCAAATCTGTCACAAAAGCTTCAGCCATGAAAGCTATCAAGAAGAGGATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACGTACGGTCAAAGCAAAAATAGAAGCTATAAACAAAGATAATCTAGCCAACAGACAAAAGCCTGGTTGCGAGAAGGGAACTGGTGTTGATAGAGCGAGGATGAACATGACAAATTCTTTGACAAAAAGGTTTAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTGGTAGAGAGAAGAGTTATCACAGTCACGGGAACTAGACCAGATGATGAGACAATTGACCAACTAATAGAAACGGGAAGCAGTGAGCAAATCTTTCAGAAGGCTATGCTAGAAACGGGAAGAGGACAGGTGTTAAATACAGTGGAAGAAATTCAGGAGAGACACGATACTGTTAAGGAAATTGAGAAAAGGCTTCTTGATTTACACCAGATCTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTGGCAAATGCAACTGATCATGTGAAATCGGGTACAGATGCTCTCCACACTGCAAAGAGCTTGCAGAAGAGGTCAAGGAAGTGCATGATGATTTCCATTATCCTTCTCCTGGTGATCGCCGCTATTGTGGTACTCTCTATACTTAAACCATGGAAGAAGTAA 918 0.4139 MNDLLSDSFVGDSKGQPSRQSDIEMGTQGPGNNYDMGMDAFNKQIAEADKQIDKLSGLLKKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKIARTVKAKIEAINKDNLANRQKPGCEKGTGVDRARMNMTNSLTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDQLIETGSSEQIFQKAMLETGRGQVLNTVEEIQERHDTVKEIEKRLLDLHQIYLDMAVLVDAQGEILDNIESQVANATDHVKSGTDALHTAKSLQKRSRKCMMISIILLLVIAAIVVLSILKPWKK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00016 305 Pfam SNARE domain 244 296 IPR000727 -
Pral4072g00016 305 Gene3D - 201 301 - -
Pral4072g00016 305 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Pral4072g00016 305 SMART tSNARE_6 203 270 IPR000727 -
Pral4072g00016 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Pral4072g00016 305 CDD SNARE_syntaxin1-like 207 267 - -
Pral4072g00016 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Pral4072g00016 305 FunFam Syntaxin 132 33 162 - -
Pral4072g00016 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Pral4072g00016 305 MobiDBLite consensus disorder prediction 1 31 - -
Pral4072g00016 305 FunFam Syntaxin 132 201 301 - -
Pral4072g00016 305 Gene3D - 34 162 - -
Pral4072g00016 305 CDD SynN 38 195 IPR006011 GO:0016020
Pral4072g00016 305 PANTHER SYNTAXIN 38 289 IPR045242 -
Pral4072g00016 305 MobiDBLite consensus disorder prediction 1 28 - -
Pral4072g00016 305 Coils Coil 38 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00016 Pral-Chr4072 96034 104425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00016 1 303 SNARE and Associated Proteins AT3G03800 60.328 3.42e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00016 K08486 - zju:107417045 481.485