Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4072g00004 ATGGAAGTTATTTTACATGATACAAACTGCAGCGGGTTTCTCGGCACAGTGGAAGCCCTGCAGTTGATGGAGAATGATGTGGTTGCTGCTATTGGTCCACAGTCATCTGGGATAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTGCCTCTTTTGTCATTTGGGGCTACAGACCCTACTCTTGCTTCTCTGCAGTACCCATATTTCGTCCGCACTACCCAGAATGACTATTTTCAGATGAACGCAATCGCAGACTTGGTTGACTACTTTGGTTGGAAGGAGGTGATTGCTATCTTTGTAGATGATGATAATGGAAGAAGTGGAATATCAGCTCTGGGTGACGCACTTGCGAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCTTTCACTGCTGGAGCCCCTCCAAGTAATATCAGTGACTTGTTGAATGGGGTAAACTTAATGGAATCACGGGTCTATGTTCTCCATGTGAACCCTGATAGTGGTTTGTCCATTTTTTCTATTGCGGAGAAAATTGGTATGATGGGCAATGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCAGTTCTAGATGCATCAGAACCAGCTGATCCTGACACAATGAATCTCTTGCAAGGGGTTATCGCCTTGCGCCATCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTGAAAAACAGTAAAGACAAGGACACTAAAAGCTTTAATTCCTTTGCATTATATGCGTATGATTCAGTTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTAATGAGGGTGGAAATGTATCTTTCAGTAGTGACCCCAGATTGCATGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACATTTGATAGTGGCCCACAGTTTCTCCAGAAAGTCTTGGCAACGAACTTCACCGGTGTAACTGGTCAAATTCAGTTTGATGGGGACAAGAATTTAATCCATCCAGCATATGATATTCTAAACATTGGTGGAACTAGCCGTAGAATTGGTTATTGGTCTAATTACTCTGGCCTGTCAGTTGTAACACCTGAAACTTTATATACAAAACCGCCTAACATGTCATCTAGCAATCAACATCTTTACGGTGTGATATGGCCAGGAGAGACTACAGCAACACCCCGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGCGAATAGCAGTACCAAACCGAATAAGCTATCTGGAGTTTGTTTCCAAAGACAAAGACACCCCGGGAGTAAAAGGTTATTGCATTGATGTCTTTGAAGCAGCCTTAAACCTGCTACCATATCCCGTCCCACGACAATATATATTATATGGAGATGGTCGCAGAAATCCGAGCTACAATGCACTTACAAATTCAGTTGCTCAAAATAATTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGAACAAGAATTGTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTAGTTGTTGCTGTTAAGGAGGAGAAGTCAAGCCCTTGGTCATTTCTCAAGCCATTCACTGCACAAATGTGGTGTGTCACCGGTGCCTTCTTTCTCTTTGTGGGAGCTGTGGTATGGATCCTTGAGCACCGTCTCAATCATGAGTTTCGTGGCTCTCCAAGGAAACAACTCATGACCGTTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACATAAAGAAAACACTGTGAGCACTTTGGGGAGGTTGGTTTTGTTGATATGGCTTTTTGTGGTGTTAATCATCAATTCAAGCTACACTGCTAGCTTGACATCGATCCTCACAGTAAAGCAACTATCATCACAGATTGAAGGAATTGATAGCTTGATTTCAAGTACTCAGCCTATTGGAATTCAAGAGGGGTCATTTGCACGGAAGTATCTGATAAATGAGCTGAATGTAGCTGAATCTAGGATAGTGATTTTGAAAAACCAGCAGGATTATATTGACGCCCTTCAGCGTGGACCACGGGCTGGAGGTGTGGCGGCAATTGTTGATGAGCTTCCTTATATTGAGATATTAATGTCTAATACTAAGTGTAAATTCAGAACTGTAGGTCAGGAGTTCACTAAGAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTGGACTTGTCAACCGCCATTCTTCAACTCTCGGAGAACGGGGACTTGCAAAAGATCCACGACAAATGGCTCTCAAAATTTACCTGTGCTGCAAAAGTGAATGACGTTGATTCAAACCAGCTCTCTCTCAACAGCTTCTGGGGCCTCTTTCTCATGTGTGGGATTGCATGTTTCCTTGCTCTAGTTGTATTCTCTATCAGGGTGTTCTGTCAATATATGAAATTCATCCCAGACAGCGAGGAGGCTGAAGAGCATATTGAGCCTGCCAGTGCCAGATCCACCAGCTTCAAGAGCTTAATTGATTTTGTAGATAAAAAGGAAGCCGAAATAAAGGAGATTTTGAGGAACAAGGGTAAGAAACGACGGCGCAGCCAGAGCTTAGACAGGAACTCCAATTATTCAAACAGCTAA 2550 0.4306 MEVILHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLASLQYPYFVRTTQNDYFQMNAIADLVDYFGWKEVIAIFVDDDNGRSGISALGDALAKKRAKISYKAAFTAGAPPSNISDLLNGVNLMESRVYVLHVNPDSGLSIFSIAEKIGMMGNGYVWIATDWLPSVLDASEPADPDTMNLLQGVIALRHHTPDTDLKKRFISRLKNSKDKDTKSFNSFALYAYDSVWLAARALDAFLNEGGNVSFSSDPRLHDTNGSMLHLASLRTFDSGPQFLQKVLATNFTGVTGQIQFDGDKNLIHPAYDILNIGGTSRRIGYWSNYSGLSVVTPETLYTKPPNMSSSNQHLYGVIWPGETTATPRGWVFPNNGKPLRIAVPNRISYLEFVSKDKDTPGVKGYCIDVFEAALNLLPYPVPRQYILYGDGRRNPSYNALTNSVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMESGLVVVVAVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRLNHEFRGSPRKQLMTVFWFSFSTMFFSHKENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVKQLSSQIEGIDSLISSTQPIGIQEGSFARKYLINELNVAESRIVILKNQQDYIDALQRGPRAGGVAAIVDELPYIEILMSNTKCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSKFTCAAKVNDVDSNQLSLNSFWGLFLMCGIACFLALVVFSIRVFCQYMKFIPDSEEAEEHIEPASARSTSFKSLIDFVDKKEAEIKEILRNKGKKRRRSQSLDRNSNYSNS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4072g00004 849 Gene3D - 3 325 - -
Pral4072g00004 849 SMART GluR_14 397 739 IPR001320 GO:0015276|GO:0016020
Pral4072g00004 849 Gene3D - 391 506 - -
Pral4072g00004 849 SUPERFAMILY Periplasmic binding protein-like I 2 388 IPR028082 -
Pral4072g00004 849 SUPERFAMILY Periplasmic binding protein-like II 371 737 - -
Pral4072g00004 849 Gene3D - 77 349 - -
Pral4072g00004 849 Coils Coil 816 836 - -
Pral4072g00004 849 Pfam Ligand-gated ion channel 739 770 IPR001320 GO:0015276|GO:0016020
Pral4072g00004 849 MobiDBLite consensus disorder prediction 827 849 - -
Pral4072g00004 849 FunFam Glutamate receptor 633 741 - -
Pral4072g00004 849 FunFam Glutamate receptor 391 507 - -
Pral4072g00004 849 CDD GluR_Plant 394 737 - -
Pral4072g00004 849 Gene3D - 507 631 - -
Pral4072g00004 849 Gene3D - 632 740 - -
Pral4072g00004 849 Pfam Receptor family ligand binding region 2 334 IPR001828 -
Pral4072g00004 849 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 801 IPR015683 -
Pral4072g00004 849 FunFam Glutamate receptor 77 238 - -
Pral4072g00004 849 PRINTS Metabotropic glutamate GPCR signature 30 56 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral4072g00004 849 PRINTS Metabotropic glutamate GPCR signature 97 114 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral4072g00004 849 PRINTS Metabotropic glutamate GPCR signature 62 81 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral4072g00004 849 PRINTS Metabotropic glutamate GPCR signature 81 97 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral4072g00004 849 CDD PBP1_GABAb_receptor_plant 3 352 IPR044440 -
Pral4072g00004 849 PIRSF IGluLR_plant 1 849 IPR017103 -
Pral4072g00004 849 FunFam Glutamate receptor 507 637 - -
Pral4072g00004 849 Pfam Bacterial extracellular solute-binding proteins, family 3 419 738 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4072g00004 Pral-Chr4072 18460 39836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4072g00004 1 704 Ion Channels AT1G05200 70.638 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4072g00004 K05387 - qsa:O6P43_000581 1365.9