Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4070g00001 ATGAATGAAACTGCTGAGGCTTCCTCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCCGAAATTAAGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCGGCAAATGGTTTGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTACAGCATTGCCTTGGATCAAAGGAACGCTTGTAATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTGTAGGGAAGAGTTCTCAGGGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCAGAGTATAGGAAGCATATGATGCCTCCTAAAGAGAAGTGTCAATATTGTGGCAAATCTTTTAGCCAGACGAAGTTATCTGTTCACCAGAGATATTATTGCGGGCCTGATGCTGAAAGAACAGAAAAGCAATCGAAGCAATTCAAGAAAGAGAAAAAAGAAGTCAATATAAAGAAGAAAATTCAGAGGAACATGGGATCAGGGAATTCAGATACCAGATGCAAGGGGTCGTCACTTTTACATTCTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCGCACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTAGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATTTGTAGCCACGCCAATTCAATTATATGGAACCGATGATCCCGGTAGGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGAGCTGTTGATCTCGCACTTCCACCTAGAATCGTTTCACTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATATAATGAGAGCCAGGCGCAGTTTAATACATATGTGGAATCGAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTCACCAGACTCCGGCAGGCTGTTGACCATCCGTACCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGGCTGACGTTAGCGTTGACGATGTTGAACAAATATGTGGCATTTGTCATGAGCCTGCAGAAGATCCTGTCGTTACCTCATGTGAACACATCTTTTGTAAGGGATGCTTGATAGACTTCTCTGCTCTCTCTTGGGGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACT 1493 0.4159 MNETAEASSDLTMPLLRYQKEWLAWALKQENSEIKGGILADEMGMGKTIQAIALVLAQREIRQMVCEPDETSSLPGSSTALPWIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKCREEFSGYDFVITTYSTVESEYRKHMMPPKEKCQYCGKSFSQTKLSVHQRYYCGPDAERTEKQSKQFKKEKKEVNIKKKIQRNMGSGNSDTRCKGSSLLHSVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKFVATPIQLYGTDDPGRRAMILLKHKVLKNVILRRTKLGRAVDLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGADVSVDDVEQICGICHEPAEDPVVTSCEHIFCKGCLIDFSALSWGECHALHAPNYLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4070g00001 498 Pfam Zinc finger, C3HC4 type (RING finger) 453 478 IPR018957 GO:0046872
Pral4070g00001 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 495 IPR013083 -
Pral4070g00001 498 CDD DEXDc_SHPRH-like 15 298 - -
Pral4070g00001 498 SMART ring_2 453 491 IPR001841 -
Pral4070g00001 498 Pfam SNF2-related domain 29 430 IPR000330 GO:0005524|GO:0140658
Pral4070g00001 498 SUPERFAMILY RING/U-box 450 488 - -
Pral4070g00001 498 Gene3D - 17 160 IPR038718 -
Pral4070g00001 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 283 IPR014001 -
Pral4070g00001 498 Gene3D - 161 370 IPR038718 -
Pral4070g00001 498 ProSitePatterns Zinc finger RING-type signature. 468 477 IPR017907 -
Pral4070g00001 498 ProSiteProfiles Zinc finger RING-type profile. 453 488 IPR001841 -
Pral4070g00001 498 SMART ultradead3 11 288 IPR014001 -
Pral4070g00001 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 355 IPR027417 -
Pral4070g00001 498 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 3 489 - -
Pral4070g00001 498 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4070g00001 Pral-Chr4070 37 5253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4070g00001 3 482 RAD5 or RAD16-like Gene Family AT1G05120 62.874 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4070g00001 SNF2_N 3.2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4070g00001 K15083 - gmx:100798333 741.88