Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4069g00012 ATGGAGCTACGTTCTCGGAGGCGACTTCCTACTCCTGATATCGATGCAACAAGAAATGAACAACCACCCGATGATGCCTCTGGAGAAGCTAAAACTGCTAGCGATTGTGGCAATAATGCAATTGAAGTCTCTTCAGATGAAGCAGCTTTGAACTCCTTTCCTGACTTAAATGAAGAACCTACTTCAAGCTTTTGCTCTTCTGATGGGTTAGGCGACAGCTCTGACTCATCTCGGCCTGGAAAGAGAAGAGGAAAGAAAAGGAGAAAACTCAGCTCTAAAATTGGAGAGTCCAGTCAGGACATAGGAGTGTTGGAGCATGGGGACGATGATGGCTCCTCAGGAGTTCAGCAGCAATCAACTGAACATGATTTGGCTAGCCTGAGAAAGAAGAAAAAAACCAAAAGACCAAGAAAAAAAACAAAACAAGTGTTGTTGTGGAATGTTTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTTTCAGAAGATGTTGAGTTGGGTCATCAGAATGAACTAATGAATGAAACTGCTGAGGCTTCCTCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCCGAAATTAAGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCGGCAAATGGTTTGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTACAGCATTGCCTTGGATCAAAGGAACGCTTGTAATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTGTAGGGAAGAGTTCTCAGGGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCAGAGTATAGGAAGCATATGATGCCTCCTAAAGAGAAGTGTCAATATTGTGGCAAATCTTTTAGCCAGACGAAGTTATCTGTTCACCAGAGATATTATTGCGGGCCTGATGCTGAAAGAACAGAAAAGCAATCGAAGCAATTCAAGAAAGAGAAAAAAGAAGTCAATATAAAGAAGAAAATTCAGAGGAACATGGGATCAGGGAATTCAGATACCAGATGCAAGGGGTCGTCACTTTTACATTCTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCGCACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTAGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATTTGTAGCCACGCCAATTCAATTATATGGAACCGATGATCCCGGTAGGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGAGCTGTTGATCTCGCACTTCCACCTAGAATCGTTTCACTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATATAATGAGAGCCAGGCGCAGTTTAATACATATGTGGAATCGAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTCACCAGACTCCGGCAGGCTGTTGACCATCCGTACCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGGCTGACGTTAGCGTTGACGATGTTGAACAAATATGTGGCATTTGTCATGAGCCTGCAGAAGATCCTGTCGTTACCTCATGTGAACACATCTTTTGTAAGGGATGCTTGATAGACTTCTCTGCTTCCTTGGGGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAACAAGGATGTAGGGGATCAGTCTAGAAAAACAATAATAAAGGGGTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAGAACTTTCAAACAAGTACTAAAATAGAGGCATTGGTATGTGACATAAGTGAGAGAGAAGAAATTCGATTTATGGTAGAAAGGGATGGCTCCGCAAAAGGGATTGTTTTTAGCCAATTCACTTCATTCTTGGATCTCATAAACTATTCCCTGCTCAAGTCTGGTGTTTCTTGTGTTCAATTGAATGGAAGCATGTCATTAGCTGCTCGGGATGCAGCCATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCATGAAAGCCGGTGGTGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTGGAGCATCAAGCTCAAGATAGAATTCACCGGATAGGGCAATATAAACCAATCAGAATTGTCAGGTTTGTGATCGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTAGGCGGCTCTGCTGAGGCTCTGGGCAAACTCACGGAGGAAGACATGAGATTTCTATTTGTTACCTGA 2661 0.4179 MELRSRRRLPTPDIDATRNEQPPDDASGEAKTASDCGNNAIEVSSDEAALNSFPDLNEEPTSSFCSSDGLGDSSDSSRPGKRRGKKRRKLSSKIGESSQDIGVLEHGDDDGSSGVQQQSTEHDLASLRKKKKTKRPRKKTKQVLLWNVWEEQHERWIDENFSEDVELGHQNELMNETAEASSDLTMPLLRYQKEWLAWALKQENSEIKGGILADEMGMGKTIQAIALVLAQREIRQMVCEPDETSSLPGSSTALPWIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKCREEFSGYDFVITTYSTVESEYRKHMMPPKEKCQYCGKSFSQTKLSVHQRYYCGPDAERTEKQSKQFKKEKKEVNIKKKIQRNMGSGNSDTRCKGSSLLHSVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKFVATPIQLYGTDDPGRRAMILLKHKVLKNVILRRTKLGRAVDLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGADVSVDDVEQICGICHEPAEDPVVTSCEHIFCKGCLIDFSASLGRVSCPSCSKLLTVDLTSNKDVGDQSRKTIIKGFRSSSILNRIRLENFQTSTKIEALVCDISEREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKRFTDDPECKIFLMSMKAGGVALNLTVASHVFIMDPWWNPAVEHQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELIFEGTVGGSAEALGKLTEEDMRFLFVT 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4069g00012 886 Gene3D - 334 543 IPR038718 -
Pral4069g00012 886 Gene3D - 544 884 IPR027417 -
Pral4069g00012 886 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 456 IPR014001 -
Pral4069g00012 886 SUPERFAMILY RING/U-box 623 670 - -
Pral4069g00012 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 884 IPR027417 -
Pral4069g00012 886 Coils Coil 354 374 - -
Pral4069g00012 886 Pfam SNF2-related domain 202 603 IPR000330 GO:0005524|GO:0140658
Pral4069g00012 886 Pfam RING-type zinc-finger 626 663 IPR027370 -
Pral4069g00012 886 ProSiteProfiles Zinc finger RING-type profile. 626 666 IPR001841 -
Pral4069g00012 886 SMART ultradead3 184 461 IPR014001 -
Pral4069g00012 886 Pfam Helicase conserved C-terminal domain 731 830 IPR001650 -
Pral4069g00012 886 CDD SF2_C_SNF 708 841 - -
Pral4069g00012 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 691 IPR013083 -
Pral4069g00012 886 Gene3D - 190 333 IPR038718 -
Pral4069g00012 886 MobiDBLite consensus disorder prediction 32 46 - -
Pral4069g00012 886 MobiDBLite consensus disorder prediction 1 136 - -
Pral4069g00012 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 528 IPR027417 -
Pral4069g00012 886 SMART helicmild6 747 830 IPR001650 -
Pral4069g00012 886 CDD DEXDc_SHPRH-like 188 471 - -
Pral4069g00012 886 ProSitePatterns Zinc finger RING-type signature. 641 650 IPR017907 -
Pral4069g00012 886 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 876 IPR001650 -
Pral4069g00012 886 MobiDBLite consensus disorder prediction 55 74 - -
Pral4069g00012 886 SMART ring_2 626 665 IPR001841 -
Pral4069g00012 886 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 51 884 - -
Pral4069g00012 886 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4069g00012 Pral-Chr4069 76116 83217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4069g00012 128 886 RAD5 or RAD16-like Gene Family AT1G05120 66.197 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4069g00012 SNF2_N 1.7e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4069g00012 K15083 - gmx:100786366 1233.39