Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4068g00038 | ATGTCGGATATACGGAAATGGTTTATGAAATCTCATAACAAGAGCAATGCTTCGGAGTCGAAGCCTACGAATCAAGTGAAGCCTTCTCCAGCTAAACCACAACCAGAAAAACCAGTGGTTGGAGGCCAAGATAGTACAGGGAAGAGGAAAACTAGCAAAAATGCTGCCACTGAAAAAAACAAAAATGATGAAAAAGAGGCACAGGAGCTTCCTGCTAAAAGGAAGAATCCTAAGGACAGTGAAGACTTGCAGAAGCCTCTTCCTAAAAAAAGTCATTTAGATGATGACAACGACGACACTGCCTTGCTTACATCTAAAAGGAAATCAGTTGATACCACCCCAATAAAAAAATTGAAGAGGGAATCTTGTAGGGAAATTCCCCTTAAGTCTCCTGATTTGGAACAAAGTGATGAGGATGATGTCAAAGATGATGTATTGCCTGTTAAATCTGGCGGAAGGGGACGTGGAGGAAGAGGAGCGTCTGCACAATCTAGTGGACGAGGTAGAGGGGGTGGAAGGGGTGGATTTATGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTACCTGAAGGTGCTCCTGATTGTTTGGCTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGACATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAATCTTCAAAAGCCAAAGAGTTGGGTACGAAATTTCTCACAGAGGATGGGTTGCTTGACATGATTCGTGCGTCAAAACCTGTAAAAGCTCATCCACAGGAAGAATCAAAAAAATTGATGAATAAGGTTGTTGCAACCCAGTCTAAAAGTCCTCAGAAAGCAGGAGTCAAGGTCTCCCAACCTTCAGGCTCAGCTTCTGCTCAAGTGAAGCCTAAGACAGAGAGTTCTGTGCAGTCTTCTTTCATGTGGACAGAGAAGTATCGACCTAAGGTTCCAAATGACATCATTGGAAATCAATCACTTGTTAAGCAGCTTCATGATTGGTTGGCACATTGGAATGAACAATTTCTTGACAGTGGAAAGAAAAAGGGAAAAAAGCAAAATGACACTGGTTCAAAAAAAGCTGTCTTATTAAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTTTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAATGAAGCATTGGGTGCTAAGACGGATGGGGCGAAGCATTCCAAAACTGTGCTTATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTTGTGAACTATTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAGCAGATGGCAAAGAGGTTGATGCAAGTTGCGAAAGCTGAAGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAGCTGGCAGAAAGAGTTAATGGAGATATGCGCATGGCGCTAAATCAGTTGCACTATATGAGCCTCTCCACGTCTGTTATTAACTATGACGACATCAGGCAGCGCCTTTTATCTAGCTCAAAGGATGAGGACATCTCGCCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGACAGGATCAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGTTTGGCTAGTAAAGATGACAATGATGTGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGGCAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCAAGTATAATTCCTGCTTCATTGTTGCACGGGCAGAGAGAAATCCTTGAACTGGGTGAACGGAATTATAACCGGTTTGGTGGTTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTCAGGCTTTTGGAAGATCTGCATGTTCACGTTCTTGCTTCTCGTGAATCCAGTCCAGGAAGGGAAACCCTCCGTTTGGATTATCTTAAACCACTCCTTCAACAGTTGACAGAACCATTGAGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAGGTTGTGGAATTTATGAATAATTACTCAATCAGTCAAGAAGATTTTGATACTATTATCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTGGATGGCATACCGCCAGCTGTTAAATCTGCACTGACAAAAGCATACAAAGAAGAGAGCAAGTCTCGGATGGTTCGAGCTGCAGATCTAGTCGCAATTCCTGGAATGAAAAAACCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCATCCGACGAGGGACTGGAACAGGGTGAAGGTGATATCCTGGAAGAGAGTGAAGAAGAGAATTCCTCAGACACAGAGGAGTTAGACGGTACCGCCACTGGTGAGAAGCTGCAGTCAGAACTTCAAAGTTTAAATTCAAAGGCCATGCAAGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGTGCCAAGAAGACGCCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCTGGGAAGGGTGGTCAAGCTTCAAGAGGTGGGGCAAAAAGAAAAAGGTAA | 2844 | 0.4286 | MSDIRKWFMKSHNKSNASESKPTNQVKPSPAKPQPEKPVVGGQDSTGKRKTSKNAATEKNKNDEKEAQELPAKRKNPKDSEDLQKPLPKKSHLDDDNDDTALLTSKRKSVDTTPIKKLKRESCREIPLKSPDLEQSDEDDVKDDVLPVKSGGRGRGGRGASAQSSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLLDMIRASKPVKAHPQEESKKLMNKVVATQSKSPQKAGVKVSQPSGSASAQVKPKTESSVQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNEALGAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSTSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNAGKLKMDDRINLSMSDPDLVPLLIQENYINYRPSLASKDDNDVKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPASLLHGQREILELGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHVLASRESSPGRETLRLDYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNNYSISQEDFDTIIELSKFKGHPNPLDGIPPAVKSALTKAYKEESKSRMVRAADLVAIPGMKKPVKKRVAAILEPSDEGLEQGEGDILEESEEENSSDTEELDGTATGEKLQSELQSLNSKAMQVQLDLKGTGNSSAKKTPAGRGKGASASAGKGGQASRGGAKRKR | 947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 1 | 197 | - | - | |
| Pral4068g00038 | 947 | CDD | BRCT_RFC1 | 196 | 274 | - | - | |
| Pral4068g00038 | 947 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 12 | 926 | - | - | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 51 | 149 | - | - | |
| Pral4068g00038 | 947 | PIRSF | RFC1 | 2 | 922 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Pral4068g00038 | 947 | FunFam | Replication factor C subunit 1 | 332 | 519 | - | - | |
| Pral4068g00038 | 947 | FunFam | Replication factor C subunit 1 | 592 | 701 | - | - | |
| Pral4068g00038 | 947 | Coils | Coil | 48 | 68 | - | - | |
| Pral4068g00038 | 947 | CDD | AAA | 380 | 483 | - | - | |
| Pral4068g00038 | 947 | Pfam | ATPase family associated with various cellular activities (AAA) | 387 | 475 | IPR003959 | GO:0005524|GO:0016887 | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 296 | 331 | - | - | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 889 | 919 | - | - | |
| Pral4068g00038 | 947 | Gene3D | BRCT domain | 173 | 275 | IPR036420 | - | |
| Pral4068g00038 | 947 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 332 | 580 | IPR027417 | - | |
| Pral4068g00038 | 947 | Gene3D | - | 592 | 701 | - | - | |
| Pral4068g00038 | 947 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 591 | 736 | IPR008921 | GO:0003677|GO:0006260 | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 859 | 880 | - | - | |
| Pral4068g00038 | 947 | Gene3D | - | 332 | 519 | IPR027417 | - | |
| Pral4068g00038 | 947 | Gene3D | - | 520 | 590 | - | - | |
| Pral4068g00038 | 947 | Pfam | Replication factor RFC1 C terminal domain | 660 | 822 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
| Pral4068g00038 | 947 | SUPERFAMILY | BRCT domain | 196 | 280 | IPR036420 | - | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 180 | 195 | - | - | |
| Pral4068g00038 | 947 | CDD | HLD_clamp_RFC | 520 | 578 | - | - | |
| Pral4068g00038 | 947 | Coils | Coil | 888 | 908 | - | - | |
| Pral4068g00038 | 947 | SMART | AAA_5 | 383 | 521 | IPR003593 | GO:0016887 | |
| Pral4068g00038 | 947 | SMART | BRCT_7 | 198 | 276 | IPR001357 | - | |
| Pral4068g00038 | 947 | FunFam | Replication factor C subunit 1 | 172 | 275 | - | - | |
| Pral4068g00038 | 947 | MobiDBLite | consensus disorder prediction | 853 | 947 | - | - | |
| Pral4068g00038 | 947 | Pfam | BRCA1 C Terminus (BRCT) domain | 198 | 273 | IPR001357 | - | |
| Pral4068g00038 | 947 | ProSiteProfiles | BRCT domain profile. | 196 | 286 | IPR001357 | - | |
| Pral4068g00038 | 947 | FunFam | Replication factor C subunit 1 | 520 | 591 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4068g00038 | 1 | 901 | Core DNA Replication Machinery Family | AT5G22010 | 68.271 | 0.0 | 1120 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4068g00038 | K10754 | - | gmx:100790070 | 1328.54 |