Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4068g00017 ATGGAGGAAATCGAAATTCCTCAGTATTTCGTGTGTCCCATTTCGCTTCAGATCATGAAGGACCCCGTGACAACATTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAATGGCTGCTCAAGGCTAAAGAACACAAGTGCCCTGTCACGAAGCAGCCATTGCCCAGAGGCTCCGATCTCACTCCCAATCACACCCTCCGCCGTCTCATCCAGGCTTGGTGCTCGGAGAACGCCGCCCACGGCGTCGATCGCATCCCTACCCCTAAATCCCCTCCCACCAAGACCCTCCTCCAGAAACTGGTGAGAAATCTCGGGCTTCCCCATCTGTACCAATCCGCATTGGAGAGATTGCATACTCTGGCTACAGAAAACCAGAGGAACCTCAAGTGCATGGCAGAATCAGGTGTGGCCGAGTCCATGATTCATCTAATTACGAAAAAGTCCAAGGAGTTAGGTAACAACACTAATTCCCTCGAACAATCCCTGCGAATTCTAGGCTTGCTCTCGTCTTGGGACAACATCAAGCCTCTGGTCGTCCAGAACATCGACTTCATCAAATCGTTGACTTGGATTCTACAGCTCCACGAGGATACCAACGTCAATTTGATAAACGAAGCAATGCCAGTGTTAAAATCCACGATCGAACTCGCAGATTCAACCCATTTAGGAAGTTTGAAACCCGAGTTCTTCAGTGAAATCACAAGGGTACTCAGAAACAGATCGATCTCCCAACAAGCCATGAAATCCGCCTTGCATATTCTCATCGAAACATGTCCTTTAGGTAGAAACAGAACGAGGATAGTGGAAGTAGGAGCAGTAATTGAATTGATCGAGCTTGAGCTAGAGAAACCTGAGAAGAACATAACGGAGCTTATATTTAACCTCCTTGCGCAGCTATGTTCTTGTGCGGATGGGAGGGAACAATTCTTGTCACACGCGGCGGGGATTGCGGTGGTGTCTAAGAGGATTCTGAGGGTTTCTCCTGCGACGGATGATAGGGCGGTTCATGTGCTGTGGTTGATGGCGAGGTACTCGGGGTCAAAGGATGTCGTATTGGAGATGTTGAGGGTGGGAGCTGTATCAAAGCTTTGCATGGTGATTCAGGCCGACTGTGATCCGAGTGTGAAAGAGAAAGCAAGATCGATACTGAGGTTGCATTCCAAGCTTGGAATAATTCGCCTTGTATTCAAGTTTATCTGTTAA 1206 0.4842 MEEIEIPQYFVCPISLQIMKDPVTTFTGITYDRESIEQWLLKAKEHKCPVTKQPLPRGSDLTPNHTLRRLIQAWCSENAAHGVDRIPTPKSPPTKTLLQKLVRNLGLPHLYQSALERLHTLATENQRNLKCMAESGVAESMIHLITKKSKELGNNTNSLEQSLRILGLLSSWDNIKPLVVQNIDFIKSLTWILQLHEDTNVNLINEAMPVLKSTIELADSTHLGSLKPEFFSEITRVLRNRSISQQAMKSALHILIETCPLGRNRTRIVEVGAVIELIELELEKPEKNITELIFNLLAQLCSCADGREQFLSHAAGIAVVSKRILRVSPATDDRAVHVLWLMARYSGSKDVVLEMLRVGAVSKLCMVIQADCDPSVKEKARSILRLHSKLGIIRLVFKFIC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4068g00017 401 SUPERFAMILY RING/U-box 3 84 - -
Pral4068g00017 401 Gene3D - 95 395 IPR011989 -
Pral4068g00017 401 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pral4068g00017 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Pral4068g00017 401 SUPERFAMILY ARM repeat 107 386 IPR016024 -
Pral4068g00017 401 CDD RING-Ubox_PUB 7 55 IPR045210 -
Pral4068g00017 401 PANTHER WDSAM1 PROTEIN 2 389 IPR045185 GO:0061630
Pral4068g00017 401 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pral4068g00017 401 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4068g00017 Pral-Chr4068 135088 136461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4068g00017 2 390 U-box Gene Family AT2G35930 43.719 9.78e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4068g00017 - - gmx:100778547 495.738