Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4068g00013 ATGGGAGTTATCCGTGCGAATTTCTGCATTTTTCTTATTTTTGGCCTGATTGTGGCGGTATACGGTGCCACAGATCCAAATGACCTCAAAATTCTGAATGATTTCAAAAAAGGTTTGGAGAATCCAGAGCTTCTTAAATGGCCGAACAACGGGGATGACCCTTGTGGTCCTCCTTCATGGCCTTACGTGTTCTGTGCTGGTAACAGAGTCGCACAGATTCAGGCCAAATCTCTGGGTCTTAAAGGAACGCTACCTCCATCTTTTAATCAGCTCTCGGAACTTTTCAACTTGGGTCTCCAACACAACAAGCTTAGCGGGATGCTGCCTACTTTTAGTGGATTATCTAAATTGGAATTCGCTTTCTTAAATGACAATCAATTTGATGGAATCCCATCTGATTTTTTTGATGGTCTCAGCAGTATTCGTGATTTAGCTTTGGCAGAAAATCCATTGAATGCGAGCACAGGGTGGTCTCTTCCTGCGAGTTTAGAAAAGTCAACACAATTAACGAATCTTTCTCTTGTGCATTGCAATTTAGTTGGACCAGTACCTGATTTTTTGGGCACATTGCCGTCTCTCTCAAATTTGTTACTTTCATACAACCGATTGTCTGGTAGCATTCCGAACAGTTTTGGTCAGTCTTCTATGCAAGTTTTGTGGTTGAATAACCAAGATGGTGGTGGGATGACTGGTCCAATTGATGTTATTGCTTCAATGACTTCTCTAACGCAGCTTTGGCTTCACGGAAATCAGTTCTCTGGGACAATTCCCAAGAGTATCGGAAATCTGACTTCCTTGACGGATCTCAACCTCAATGGTAATCAACTTGTTGGCTTGATTCCTGAAGGTCTGGCCAATATGGAACTTCAGAATTTGGTGTTAAACAATAACAGGCTCATGGGTCCTATACCAAAGTTTAAGGCTAGAAATGTTTCTTATGATTTCAATTTCTTTTGTCAACAGAAGCCTGGCGTTGAATGTGCCCCCGAGGTTACTGCTCTACTTGATTTTCTCGGTAATCTAAATTACCCTTCAACGCTCGCTTCTCAATGGTCTGGTAATGAACCGTGTACTGGGCCATGGCTGGGATTGAGCTGCAATCCCAAGTCAGAGGTATCGATTATTAACTTTCCCCACCGCAGGCTCAATGGTACCCTGAGCCCCTCCCTTGCTAAGTTACCTTCACTCCATGAGATCAGGCTTGGAGGGAATAATTTAACTGGCCAAGTTCCTAGCAGTTTCACTGAACTGAAATCTTTGCAGCTCTTGGATTTAAGTGATAATAATCTTGAGCCCCCAGTGCCAAATTTTCATGGTGTGAAGCTTGTTCTTGATGGCAATCCTCTTTTTGCCAACCAAACAGGAAAAAGTCCCCATCCTATCAGCAGCCCACTACCACCAAGTTCACAATCTTCACCTCACAACCCATCTCCATCCTCTGAACGCCATCCTTCCTCGAGTCAGAGTTCAAGCTCAAATCCATCAAGGTCAGGACAAGTACAATCACAGCAAGACAAATCTAGAAGATTCAGAACACTAGCAATAGTGGCTGGAGCTGCAATTTTTGCCATTGCAGCTATTCTGGTTATTTTCCTATCCATATATTGCTCAAAGAAGAAGAAGAAGAAAACCTTATTGGATGATTCTAGTTCCATTGTGGTTCATCCTCGAGACCCGTCCAACCCAGATGTGGTTAAAATTGCAGTAGCCGACAACGCTGCTGGAAGCTTATCATCAAAGGCCGGGACAAGTTCTTTGAGAAACATTAGTGGTGAATCTGAAACCTCGCATGTGATTGATGCTGGTAATCTTGTGATCTCTGTTCAAATTTTACGCAAGGTTACCAAAAACTTTTCTCCAGAAAATGAGCTAGGCCATGGTGGGTTTGGGACTGTCTATAAAGGTGAACTGGAAGATGGGACGAAAATAGCAGTGAAGAGAATGGAGAGTGGAGCTATGAGCAGGAAAGCACTGCATGAGTTTCAGGCTGAAATAGCTGTTCTTTCTAAGGTTCGTCACCGACATTTAGTATCTTTGTTGGGATACTCCACTGAAGGCGATGAAAGACTTTTGGTCTATGAATATATGCCTCTGGGTGCTCTAAGCAAGCATCTATTTCAGTGGAAAAGCCTGAAATTGGAGCCTTTGACTTGGTCGCAAAGGCTTGTGATAGCACTAGATGTTGCAAGAGGAATGGAATACCTCCATAGTCTTGCCCGCCAGACCTTCATCCACCGAGACCTCAAGCCTTCTAATATTCTTCTTGATGAAGATTTACGGGCAAAAGTTTCAGATTTTGGCTTAGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGTAACTACTCTTGCTGGGACGTTTGGATATCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAGGTTGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGACTGATGGCTCTTGATGAGAGCCGGCCCGAGGAGAGCCGATACCTAGCTCAGTGGTTTTGGCAGATTAAATCAAACAAAGAAAAGCTCATGGCTGCCATTGATCCTGCTCTTCAGGCAACTGAGGAGACTTGGGAAAGCATCTCCATTATAGCTGAACTTGCTGGACATTGCACTGCTAGGGAACCAAACCACCGACCAGACATGAGTCATGCAGTCAATGTATTGGCTGCATTAGTAGAGAAATGGGTACCAATTGACGATGAATTAGATTGTTTTACCGGCATTGACTTTGGACGACCACTTCCCCAGATGCTGAAGGATTGGAAGGAAGCAGGAAGCAGAGATATTAGCTATGCTAGCCTTGAAGACAGCAAAGGAAGCATACCTGCAAAGCCTGTTGGGTTTGCAGACTCCTTTTCTTCTGCTGATGCTCGGTAA 2895 0.4408 MGVIRANFCIFLIFGLIVAVYGATDPNDLKILNDFKKGLENPELLKWPNNGDDPCGPPSWPYVFCAGNRVAQIQAKSLGLKGTLPPSFNQLSELFNLGLQHNKLSGMLPTFSGLSKLEFAFLNDNQFDGIPSDFFDGLSSIRDLALAENPLNASTGWSLPASLEKSTQLTNLSLVHCNLVGPVPDFLGTLPSLSNLLLSYNRLSGSIPNSFGQSSMQVLWLNNQDGGGMTGPIDVIASMTSLTQLWLHGNQFSGTIPKSIGNLTSLTDLNLNGNQLVGLIPEGLANMELQNLVLNNNRLMGPIPKFKARNVSYDFNFFCQQKPGVECAPEVTALLDFLGNLNYPSTLASQWSGNEPCTGPWLGLSCNPKSEVSIINFPHRRLNGTLSPSLAKLPSLHEIRLGGNNLTGQVPSSFTELKSLQLLDLSDNNLEPPVPNFHGVKLVLDGNPLFANQTGKSPHPISSPLPPSSQSSPHNPSPSSERHPSSSQSSSSNPSRSGQVQSQQDKSRRFRTLAIVAGAAIFAIAAILVIFLSIYCSKKKKKKTLLDDSSSIVVHPRDPSNPDVVKIAVADNAAGSLSSKAGTSSLRNISGESETSHVIDAGNLVISVQILRKVTKNFSPENELGHGGFGTVYKGELEDGTKIAVKRMESGAMSRKALHEFQAEIAVLSKVRHRHLVSLLGYSTEGDERLLVYEYMPLGALSKHLFQWKSLKLEPLTWSQRLVIALDVARGMEYLHSLARQTFIHRDLKPSNILLDEDLRAKVSDFGLVKLAPDGEKSVVTTLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAQWFWQIKSNKEKLMAAIDPALQATEETWESISIIAELAGHCTAREPNHRPDMSHAVNVLAALVEKWVPIDDELDCFTGIDFGRPLPQMLKDWKEAGSRDISYASLEDSKGSIPAKPVGFADSFSSADAR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4068g00013 964 FunFam receptor protein kinase TMK1 696 913 - -
Pral4068g00013 964 MobiDBLite consensus disorder prediction 449 506 - -
Pral4068g00013 964 SMART LRR_typ_2 190 213 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 263 286 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 114 137 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 417 439 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 239 262 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 91 113 IPR003591 -
Pral4068g00013 964 SMART LRR_typ_2 393 416 IPR003591 -
Pral4068g00013 964 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Pral4068g00013 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Pral4068g00013 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Pral4068g00013 964 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Pral4068g00013 964 MobiDBLite consensus disorder prediction 942 964 - -
Pral4068g00013 964 CDD STKc_IRAK 624 894 - -
Pral4068g00013 964 FunFam Receptor-like kinase TMK4 26 324 - -
Pral4068g00013 964 Gene3D Ribonuclease Inhibitor 329 453 IPR032675 -
Pral4068g00013 964 FunFam receptor protein kinase TMK1 580 695 - -
Pral4068g00013 964 Gene3D Transferase(Phosphotransferase) domain 1 696 906 - -
Pral4068g00013 964 SUPERFAMILY Protein kinase-like (PK-like) 599 894 IPR011009 -
Pral4068g00013 964 Gene3D Phosphorylase Kinase; domain 1 579 695 - -
Pral4068g00013 964 ProSiteProfiles Protein kinase domain profile. 618 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4068g00013 964 Gene3D Ribonuclease Inhibitor 26 324 IPR032675 -
Pral4068g00013 964 SUPERFAMILY L domain-like 29 437 - -
Pral4068g00013 964 MobiDBLite consensus disorder prediction 474 506 - -
Pral4068g00013 964 SMART serkin_6 618 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4068g00013 964 PANTHER OSJNBA0070M12.3 PROTEIN 9 964 - -
Pral4068g00013 964 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Pral4068g00013 964 Pfam Protein tyrosine and serine/threonine kinase 621 893 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4068g00013 Pral-Chr4068 60581 65336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4068g00013 90 912 Receptor kinase-like Gene Family AT1G55610 30.742 1.98e-84 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pral4068g00013 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4068g00013 K00924 - tcc:18590223 1308.89