Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4068g00002 ATGAACCGAGGATCTAATGAAGCAGCTAATAGCCCTTTTCAGACTCCGATGTCAGGAAAAATGGGGAAGGCAAGCAAAGCATCAAAGCTTCCAAAATGCAGCAAAGCTGGACCTCAAACCCCAGGATCAAATGTTGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAACTTGATCAAGCAAGCCGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAGGCTGATGATAGTTTTTCTAGTTTGCAGACAGAGGTTGAAAACCTTACTATGAAGGAGGGCCAGTTAGATGAGCAAATAAGGGAGATGCAAGAAAGACTGAGGAAACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTCTCACGGAAGATGATATAAAGGGTTTGCCCTGCTTCCTGAATGAAACCTTAATAGCCATTAAAGCTCCCCATGGCACCACTCTTGAGGTCCCTGATCCAGATGAGGCTGTTGATTATCCCCACAGGAGATACAGGATAATCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAGGAAAAATTTGAGGAGATCAATGGAGTCGATGTACCACCCAATCTTCCATCCAGTCCAGAGTTGAACAGGCATCCGGCAACAGTGATCACTGAGGATGCAAGGAATGACAAAGAAATGCAGGAACAAGACGGTCATAGACCTGGTTCTGATTTGAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTATTGGCTTCTATCAAATGCTGATGTTAGCATAACAGACATG 996 0.4277 MNRGSNEAANSPFQTPMSGKMGKASKASKLPKCSKAGPQTPGSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMKEGQLDEQIREMQERLRKLSEDENNQKWLFLTEDDIKGLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPHRRYRIILRSTMGPIDVYLVSQFEEKFEEINGVDVPPNLPSSPELNRHPATVITEDARNDKEMQEQDGHRPGSDLSASQDFVSGIMKIVPSDVDSDADYWLLSNADVSITDM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4068g00002 332 FunFam E2F transcription factor 1 54 127 - -
Pral4068g00002 332 CDD E2F_DD 136 242 IPR032198 GO:0046983
Pral4068g00002 332 Coils Coil 145 175 - -
Pral4068g00002 332 PANTHER TRANSCRIPTION FACTOR E2F 8 332 IPR015633 GO:0000978|GO:0006357
Pral4068g00002 332 SMART E2F_TDP_2 60 125 IPR003316 GO:0005667|GO:0006355
Pral4068g00002 332 Coils Coil 76 96 - -
Pral4068g00002 332 MobiDBLite consensus disorder prediction 37 55 - -
Pral4068g00002 332 Pfam E2F/DP family winged-helix DNA-binding domain 62 125 IPR003316 GO:0005667|GO:0006355
Pral4068g00002 332 SUPERFAMILY "Winged helix" DNA-binding domain 60 123 IPR036390 -
Pral4068g00002 332 Pfam E2F transcription factor CC-MB domain 141 241 IPR032198 GO:0046983
Pral4068g00002 332 Gene3D - 132 242 - -
Pral4068g00002 332 MobiDBLite consensus disorder prediction 271 289 - -
Pral4068g00002 332 MobiDBLite consensus disorder prediction 253 297 - -
Pral4068g00002 332 Gene3D - 54 127 IPR036388 -
Pral4068g00002 332 MobiDBLite consensus disorder prediction 1 18 - -
Pral4068g00002 332 MobiDBLite consensus disorder prediction 1 55 - -
Pral4068g00002 332 SUPERFAMILY E2F-DP heterodimerization region 138 242 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4068g00002 Pral-Chr4068 1905 5841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4068g00002 6 332 E2F-DP Transcription Factor Family AT5G22220 64.740 5.60e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral4068g00002 E2F_CC-MB 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4068g00002 K06620 - gmx:100819817 540.421