Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4067g00039 ATGGGTCTGAGAGATCAGTACTGCAATGTACAAGACAAGAATAATCTCTACTTTCATGCTTCTCCAAATTTCATAGAATGGCTCAAGCCATCATCATCATCATCTTCTTCTTCTGATGAGACTTGTCAAAACGAGGCCGTTCGGGAGACCATCCAGTTTCTGCCCCCATCGAAAGATTTGGAAGTCGGAGTGGAAAAGGAGGTGTTTGGATCAGTGAAAGAAGAGAAGGTACTGCTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACACAGAAGAAGACAGTGATATGAAGAAGAAGGTTACTGATGTTAAAGAAGAAGACGAAGAACAAGAAGAAGGCATGAGGATGAGGATGATGAAGAGAAGCTTCCATGGATCTTTCAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGTAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGACATGGGTCCGAATTTAGGAAAGGACCAGACTCGCTTAGAGGAACACAACCAGCGGCAATGCTGAGGCTACCATGTTATTGCTGTGCTCATGGCTGCAAGAACAACATCAACCACCCTAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACTCACTACAAGAGAAAGCATGGCTCCAAACCCTTCATGTGCAGAAAATGTGCCAAGACTTTCGCTGTGAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTCGGAAAGGGCCACAAACCCCATCCTTCTCTCGAAGGTTTTGAGAAGGACTCCGAAGAAGATGAAGTCATTACTCACACATAA 933 0.4534 MGLRDQYCNVQDKNNLYFHASPNFIEWLKPSSSSSSSSDETCQNEAVRETIQFLPPSKDLEVGVEKEVFGSVKEEKVLLEQVGVALHIGLPTNYTEEDSDMKKKVTDVKEEDEEQEEGMRMRMMKRSFHGSFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEVITHT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4067g00039 310 SUPERFAMILY beta-beta-alpha zinc fingers 149 176 IPR036236 -
Pral4067g00039 310 Gene3D Classic Zinc Finger 195 286 - -
Pral4067g00039 310 MobiDBLite consensus disorder prediction 286 310 - -
Pral4067g00039 310 SMART c2h2final6 153 175 IPR013087 -
Pral4067g00039 310 SMART c2h2final6 200 232 IPR013087 -
Pral4067g00039 310 SMART c2h2final6 237 257 IPR013087 -
Pral4067g00039 310 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Pral4067g00039 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Pral4067g00039 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 290 IPR013087 -
Pral4067g00039 310 PANTHER ZINC FINGER PROTEIN WIP2 26 304 IPR043584 GO:0003700|GO:0010468
Pral4067g00039 310 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
Pral4067g00039 310 MobiDBLite consensus disorder prediction 282 310 - -
Pral4067g00039 310 MobiDBLite consensus disorder prediction 97 119 - -
Pral4067g00039 310 Gene3D Classic Zinc Finger 152 175 - -
Pral4067g00039 310 FunFam Zinc finger protein WIP2 206 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4067g00039 Pral-Chr4067 221699 225066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4067g00039 21 302 C2H2 Transcription Factor Family AT1G08290 56.308 3.64e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4067g00039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4067g00039 - - gmx:100788451 434.491