Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4066g00011 ATGGAGTTCTGGGGCGTTGAGGTCAAGGGTGGGACACCTGTTGAAGTAGACCCAGATGAGTTTGGTAAATGCATACACCTGTCTCAGGCTGCTCTTGGTGAGGCAAAGAATAAATCAAGTGAACCTGTGATCATTTATCTGAAGTTTGATGACCAGAAGCTTGTTTTAGGAACCCTTTCCCCAGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTGTGGTTACAAAGCCGAATTACCAGGGGAGATGGATGAGGAACTGACTGACAGTGAAGATGATGTGGGTAACCCAGTGATGACCAGAGAGAATGCAAAACTTGATATAAAGCCTGAAGTAGCAAAGGCTGCTGCATCTAAAAGTAATGATGTTAAGCCTGCCGATTCAAAAAAGCAAGTCAAGGTTGTGGATCCAAAGAAAGATGAAGATGAATCAGATGATGAAGAGGATGATGATGAAGATGACGAAGATGATGAAGATGACAGTTCTGATGAGGATATTTTGGGTGGTGATGTTGATGGTAGTGACGAGAGTGAGAGTGATGAAGATGATGATGAAACCCCTCCTAAGAAGGTCGATCATGCCAAGAAGAGACCTAATGAATCTGCGCTGAAAACTCCTGTTCCTGCGAAGAAAGCAAAAGCTGCTACCCCTCAAAAGACTGATGGTAAGAAAGGCGGCCATGTAGCAACTCCTTATCCACTGAAGAAGGATGGAAAGACTCCTAAAAGCGACCAAACTCCCAAATCCGGCGGACAGTTCACCTGCAAATCCTGTAGCAAGACTTTTAACTCAGAAGGGGGTTTGCAACAACATTCAAAGGCTAAGCATGGGGGTCAGTGA 894 0.4362 MEFWGVEVKGGTPVEVDPDEFGKCIHLSQAALGEAKNKSSEPVIIYLKFDDQKLVLGTLSPEKFPQLSFDLVLEKKFELSHNWKNGSVYFCGYKAELPGEMDEELTDSEDDVGNPVMTRENAKLDIKPEVAKAAASKSNDVKPADSKKQVKVVDPKKDEDESDDEEDDDEDDEDDEDDSSDEDILGGDVDGSDESESDEDDDETPPKKVDHAKKRPNESALKTPVPAKKAKAATPQKTDGKKGGHVATPYPLKKDGKTPKSDQTPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4066g00011 297 MobiDBLite consensus disorder prediction 262 288 - -
Pral4066g00011 297 MobiDBLite consensus disorder prediction 202 218 - -
Pral4066g00011 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Pral4066g00011 297 MobiDBLite consensus disorder prediction 159 201 - -
Pral4066g00011 297 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Pral4066g00011 297 MobiDBLite consensus disorder prediction 141 158 - -
Pral4066g00011 297 FunFam Histone deacetylase HDT1 1 99 - -
Pral4066g00011 297 SUPERFAMILY beta-beta-alpha zinc fingers 260 293 IPR036236 -
Pral4066g00011 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Pral4066g00011 297 Gene3D Nucleoplasmin core domain 1 98 - -
Pral4066g00011 297 SMART c2h2final6 271 294 IPR013087 -
Pral4066g00011 297 Gene3D Classic Zinc Finger 269 297 - -
Pral4066g00011 297 MobiDBLite consensus disorder prediction 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4066g00011 Pral-Chr4066 38429 42834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4066g00011 1 294 C2H2 Transcription Factor Family AT5G03740 42.765 2.70e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4066g00011 NPL 6.5e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4066g00011 - - qsa:O6P43_000420 295.819