Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00081 ATGGAGGACTGTACGGTCACCCAGTCTTTGAACTCCCCGCAGACCGAACAGCACATGGCAAGTACGGCCGACATTAACGGCCCCTCCTTTGTTTTGGGGGCTGTTGGAGTCCAGAACTCCGCCGTCGGAGGAAATTCCGAGGCTATCGGTTCGGAAGTTGGGTTGAAGAGGAAAAGGGGAAGGCCTCGGAAGTACGATGGAAACCTTCCGTCTCCAAAATTGTCGCCGTCGGGATTTTCAAACTCTTCATCTGCTAAGCGAGGCAGAGGAAGGCCACGTGGCTCTGGAAAGTTGCAGATTTTAGCTTCAATGGGAGGAATGTTTTCAGCCACAGCTGGAGGAAGCTTTATCCCTCATGTAGTGATTGTGAATCCTGGAGAGGATGTTGCGAATAACATATTATCATTTTCTAATAAATCCCCTCGAGCTCTTTGCATACTCTCAGCTATTGGTGCTGTATCTATTGTCGACATTCAGCAACCGGATTCTTCTGGTCGTTGTTTGAGATATGAGGGTCTCTTTGAGATAATAACTTTATCTGGATCATATACCTATGGTGGCATCGGTGGTGATATGCACCGGAAAAGTCTCACCATGAGGATATCACTAGCTCAACCTGATGGGAAGATTTTCGGAGGTGGTGTTGGGGGCTCACTGATAGCAGCAGGCCCTATTCAATTAATTCTGGGCAGTTTTAAGCAAAACATCAGTAGTGAAATTAAAAGACGGCTGTCCCCTGGATCTTCTGGTGCTGCCGACATGCCTGGTGATTCAGATTCAGTGAGGCTTTCCTTACAGGTTCCTAAATTGATAGAATCTGAACAGAGCTTTCCTTCACCAACATCTGGACTTATGCCGACATCTAATGGATTGCCTGATCATGTCATGCCTAGAACATCTAATGGATTATCTGACAATGTCACTGCTGCCACAGCTAATGGTAATGGGTTGCCAGATTTCTTTACTCCGAATCAGAGCATGCAATCTACCTCGTTGAATGGTGCTGGCCTAGACTGTCAGGTCTTGCAGCCCTTTCCAGATCCAATGACGTTTGGAGATATTAATAATCGTGTCTCTCAGATGTGA 1086 0.4678 MEDCTVTQSLNSPQTEQHMASTADINGPSFVLGAVGVQNSAVGGNSEAIGSEVGLKRKRGRPRKYDGNLPSPKLSPSGFSNSSSAKRGRGRPRGSGKLQILASMGGMFSATAGGSFIPHVVIVNPGEDVANNILSFSNKSPRALCILSAIGAVSIVDIQQPDSSGRCLRYEGLFEIITLSGSYTYGGIGGDMHRKSLTMRISLAQPDGKIFGGGVGGSLIAAGPIQLILGSFKQNISSEIKRRLSPGSSGAADMPGDSDSVRLSLQVPKLIESEQSFPSPTSGLMPTSNGLPDHVMPRTSNGLSDNVTAATANGNGLPDFFTPNQSMQSTSLNGAGLDCQVLQPFPDPMTFGDINNRVSQM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00081 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 273 IPR039605 GO:0003680
Pral4065g00081 361 MobiDBLite consensus disorder prediction 73 88 - -
Pral4065g00081 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 233 IPR005175 -
Pral4065g00081 361 MobiDBLite consensus disorder prediction 1 22 - -
Pral4065g00081 361 MobiDBLite consensus disorder prediction 42 96 - -
Pral4065g00081 361 ProSiteProfiles PPC domain profile profile. 113 257 IPR005175 -
Pral4065g00081 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 235 - -
Pral4065g00081 361 CDD DUF296 118 232 IPR005175 -
Pral4065g00081 361 Gene3D - 118 248 - -
Pral4065g00081 361 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Pral4065g00081 361 SMART AT_hook_2 56 68 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00081 Pral-Chr4065 389240 392489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00081 52 243 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.269 4.13e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00081 - - pcin:129313760 577.4