Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00080 ATGAGGAATAATAAGGTTGTAGACCAACAATTATCTACTGTCCGATCCATCGTTGGCGCTGAGTATTCTGACATGGATATCATTAGAGCCCTGCACATGGCTAACAATGACCTCACCGCCGCCATTAACATCATCTTTGATACCCCCAAGTTCAAATTGAAAGAGAGGTTAAGTGTGGGGACTCAGAGGAATTCACAAGTTTCGCATCGAAGTTCAAGCTCTGATGCTGGAATTGGAGGTGGAAGTGTCACGGTGAAGTCCAAGCCAACTGCTTCTGAGGACAATAATCGATCTCTGGGGTCGGAAGCAAATGTTGCCGACTCGGTTTCCAACTCAGGTGATTGTACCGCCGAGGATGTGGGAGGGCCTTCAAGTTCAGCTGCAAGTGATTGGTGGTTCGTGGGTTGTGGGGAAATGGCGGGTCTTTCGACCAGTAAAGGGAGGAGTATGAATCCTGGTGATCAAGTATTGTTCAAGTTCCCGCTGAAGATAGGGTCAACTACGCCATCTCCAGGTAAGGGTTTTGGACGGGGACGACCGGCAGCAACAGCTTGTTCGGAGATAGTGCGGTTCTATACCAAGGAAACAGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTGTACGGGATAAGAAAGTTAGGATTGATGGGCATTGCAAACATGCTCCTAATAATTTGAGCATCATGGACACCATTATTTTGTCAATTAGAGTATTCATCAATAGCTCAATGTTTCGCAAACGTCACCAGGTTTCTCTCAAGGACGCCACAAATTCCACTGATGAATCAGTATTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTCAATGAAAAGGAGGACTCTTCTCTTCAGGCAACATTACTGCACATCAAATCCAACCGTCCTTCTGTGAATGATAATGAGGTAGACAGTGAGGAATCAATATCTGATACTGATCTTGACAAGATTGTTGGTGTTGGAGCTTGCTCAGAGCTAGAGGAAATGGATCCCCCTGGTAGTCTTCAGTGTGAATTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGAAGGGACGGCCTATGGATGAGGCAGCAACAACACTTCATCCATGCTGGGAGGCATATCGCCTGGCAGACGAGAGGGAGCTGGTTATTTATTTGAATGTTTTCTCTGGAGAAGCCACAATAGAATTTCCAAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATAGCACTCCTCGTTGCCCATTCAGGCACTGGTGGTTCATCAAGTAGTCAACTCATGGATCAACCCTTGTCTGAAAGTGAAGTTAATGACATGGTGCAAAACTCTTCAAATGTACCTAAGAAGGCAAACAAGTTTTCTAGTTTTGATAAACTGAGGAAGCAAAGGAATGCTCTAACAAATGGTGGCAGTCTGATAATATGTCCCATGACACTTCTAGGACAATGGAAGGCAGAGATTGAAACTCATGTGCAGCCTGGATCTCTGTCTTTATATGTTCATTATGGACAGAGTAGACCAAAAGATGCAAAAACTCTGGCTCAGAGTGATGTTGTAATTACTACATATGGAATTGTAGCCTCTGAGTTTTCCGGCGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTTTAGGGTGGTTCTAGACGAGGCACATACTATAAAATCTTCCAAAAGCCAAATATCGATGGCTACTTCAGCTTTAATTGCTGACAGACGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCGTTCAGAAACCATTCGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATTCTGAAGCCAATCATGTTGAGGAGAACTAAACATAGCATGGATCGCGACGGCAAGCCTATTATTGTTCTTCCTCCAGCTGAAGTGCAGATAATTTACTGTGAACTCACTGAAGCTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAGCAAGGGCGCATTCTTCATAATTATGCTTCCATATTGGAGCTGCTCTTACGTCTTCGTCAATGCTGTGACCATCCATTTCTTGTTATGAGCCGGGGTGATACACAAGAATATTCTGATCTAAACAAACTAGCTAAACGTTTCCTCAAAGGAAGCCATAATGGTTCAGAAGGCGAAGCAAAAAATGCACCTTCACGGGCTTATATTCAAGAAGTTGTGGAAGAGCTACGTAAGGGGGAACAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCGGTATTGACCCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCTAGTTGGAGGAATTCTAATTCTGGTTTATGCCCTGTCTGTAGGAAAACACTAAGCAGGCAGGACCTTTTAACCGCCCCCCGGGAAAGTCGGTTTCAGATTGATATTGAGAAGAACTGGGTGGAGTCAGGCAAGGTAACTGCCCTTTTGCGTGAACTTGAAAATCTTCGCCCATCAAGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACATCTTGCAGATTCCCTTTACTAGGAATAACATTCCATTTCTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGTGAAAAAGTACTCAGACAATTCTCAGAAGACAGCAATATCCTGGTGTTGTTAATGTCCCTCAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCAAATGCTTTTGTCATGGATCCGTGGTGGAATCCAGCTGTGGAGGAGCAAGCTGTAATGCGAATCCATCGCATTGGACAAACAAAGAATGTGGCCATCAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTGCAAGCACGCAAACAGCGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 3144 0.4482 MRNNKVVDQQLSTVRSIVGAEYSDMDIIRALHMANNDLTAAINIIFDTPKFKLKERLSVGTQRNSQVSHRSSSSDAGIGGGSVTVKSKPTASEDNNRSLGSEANVADSVSNSGDCTAEDVGGPSSSAASDWWFVGCGEMAGLSTSKGRSMNPGDQVLFKFPLKIGSTTPSPGKGFGRGRPAATACSEIVRFYTKETGEIGRIPNEWARCLLPLVRDKKVRIDGHCKHAPNNLSIMDTIILSIRVFINSSMFRKRHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKEDSSLQATLLHIKSNRPSVNDNEVDSEESISDTDLDKIVGVGACSELEEMDPPGSLQCELRPYQKQALHWMIQLEKGRPMDEAATTLHPCWEAYRLADERELVIYLNVFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLVAHSGTGGSSSSQLMDQPLSESEVNDMVQNSSNVPKKANKFSSFDKLRKQRNALTNGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAKTLAQSDVVITTYGIVASEFSGENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMATSALIADRRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSMDRDGKPIIVLPPAEVQIIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKGSHNGSEGEAKNAPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSNSGLCPVCRKTLSRQDLLTAPRESRFQIDIEKNWVESGKVTALLRELENLRPSSSKSIVFSQWTAFLDILQIPFTRNNIPFLRLDGTLNQQQREKVLRQFSEDSNILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00080 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 873 IPR013083 -
Pral4065g00080 1047 CDD UBA_Cbl_like 11 49 - -
Pral4065g00080 1047 MobiDBLite consensus disorder prediction 59 123 - -
Pral4065g00080 1047 Pfam Helicase conserved C-terminal domain 882 994 IPR001650 -
Pral4065g00080 1047 Pfam SNF2-related domain 369 756 IPR000330 GO:0005524|GO:0140658
Pral4065g00080 1047 Gene3D - 424 691 IPR038718 -
Pral4065g00080 1047 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 124 1047 - -
Pral4065g00080 1047 Gene3D - 694 1047 IPR027417 -
Pral4065g00080 1047 ProSiteProfiles Zinc finger RING-type profile. 812 852 IPR001841 -
Pral4065g00080 1047 SMART helicmild6 911 994 IPR001650 -
Pral4065g00080 1047 SUPERFAMILY RING/U-box 799 858 - -
Pral4065g00080 1047 Pfam Zinc finger, C3HC4 type (RING finger) 812 851 IPR018957 GO:0046872
Pral4065g00080 1047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 882 1047 IPR001650 -
Pral4065g00080 1047 Pfam HIRAN domain 135 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral4065g00080 1047 CDD SF2_C_SNF 878 1005 - -
Pral4065g00080 1047 FunFam DNA repair protein RAD5B 421 679 - -
Pral4065g00080 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 678 IPR027417 -
Pral4065g00080 1047 CDD DEXDc_SHPRH-like 366 678 - -
Pral4065g00080 1047 SMART ring_2 812 851 IPR001841 -
Pral4065g00080 1047 ProSitePatterns Zinc finger RING-type signature. 827 836 IPR017907 -
Pral4065g00080 1047 SMART ultradead3 362 659 IPR014001 -
Pral4065g00080 1047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 640 IPR014001 -
Pral4065g00080 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1036 IPR027417 -
Pral4065g00080 1047 SMART HIRAN_2 134 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00080 Pral-Chr4065 377165 386818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00080 4 1047 RAD5 or RAD16-like Gene Family AT5G22750 70.257 0.0 1513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4065g00080 SNF2_N 1.6e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00080 K15505 - qsa:O6P43_000417 1630.15