Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00079 ATGGAGGCCCCTGTCATCAGATCGAGGGGTCGGCCGAGGAAACGGAGAAAAGAGGATGAAAATGGGACGGATGGTGGGAGATTGGTTCCCGATTTGAAAAGGCAAGCTGTTGGGACGAGAAGACCGATAGAACTGGTTGGACGATATATAATTAAAGAGTTCAAGGGAAGTGGCGTCTATCTTGGGAAAGTTGTGTATTACGAGTGTGGTTTATATAGAGTCAATTACGAGGACGGTGATTATGAGGATTTAGACAGCAGCGAGATTCGTGGAATGCTTCTCAACGACTGTGATCTTGATGATGAGTTGACTAAAAGGAGGAATGAATTGGATCAATTGGTGTTGAAGTATAGCGCCAAGAAAACAGATGGCACTGGAAGTAGTTCCGCTGATTTAAACAAAGATGTCACGGGGCTTGAGGCTCCTGCGTCAAGCGAATTGCCTGGTGGGTTATTGATTGAACACGACGAGGTAGATGTTGAGGAAGATGCTCATTCATCAAGTGACGAAAGAGATTCCACATCTGATGCAGAGATACCTTCTCTACCTCCTCCGCTGCAGTTGCCACCGTCTTCAGGGACTATTGGAGTGCCAGAGCCATATGTTTCTCATCTTCTTGCAGTCTATGGATTTTTACGGTCCTTCAGCATTCGCCTGTTTTTAAGTCCGTTTTCTCTGGATGATTTTGTCGGTTCTCTTAACTGCCAAGTTTCAAATACTTTGTTTGATTCCATTCATGTTTCTCTGATGCGTGCATTGAGGCGTCACCTTGAAGCTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGGGGTTGATTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTATGGATACACAAGAGGACCTGGGTGGAAAGGATTTTATGAGGAGACTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACAATACTGCAAATTCTTTGTGATGATGTTTTGGAATCTGAGGAAATGAAAACTGAAATGGGCATTCGTGAAGAATTGGAAGTTGGGATGGAGTATGATGCTCAAGATACCCTTCCAGAAGAAAATTGGCCTAGATTCCATCCAAGAAATGCAAAAAATGCTTGCAAGGATAAAGAAGCTACAAAGTTTGTTTTAGAATCTAATGCTGTGAAGCCACTTGGTAACTCTCTTCTAGATTTCAGAGACACTAGAAGGACTGAGGATGCCGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCGGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCGCGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATCTGTATGGACAACTCTTCATGGGTACTTGCGACCACTTACTGGTACTCACTGTTAACAGTGAACTTTGTCTCAGATATTACAACCAGAATGACATTTTAAAAGTTCTCCAATTGCTTTATGCTTCAGTCGACCATAGGCCCCTATATTATGGAATTTGTATGGCTGTGTTACATTATTGGAATATTCCAGAAAGTTTCTTGCATGTATCTGTTGGAAGCGGAACAGATGCTAACAATTCAAGTACAGAGGAAGATGCAAAGTCCTCTAGTTTATCAACCACTCCTTTGGGTGAAAAAGAGTATACAGCAATTAAGTCAGTGAAGACAGAATACCCTGCAACCAGTGGGATTGTAAGTCATGGTGATTACATGGTTCGATCTAACTCGTTGGTCACCACTACTAGAGAGGCCTGTGCTTTTGAAAGCAGCAATGACATTAGAACTAGAGAGTACTTTACCATGAACACTATGTTTCATAAGGAGACTAGAATGGAGCCTGTCATCTCTGATGGTCCTGGTGGCCATCAGCGCAGTCACTTTGATATGACCAACAGTCATGGACATGCAAGTGATAAGCAGCTACCCTTTGCTCCATCCTTGCAATTTAAAGAAGGCAACCAAGCTAGCTCTGGAAAGGTTGAACATAATTCAACTAAGGATTTTTCATACATGGGTTTTTCTTTTAAGCCTCAGTCTTATGTTAATCACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCCATTCTTTCTTCCGAGGATTCTAGGTCGGAGGGTCATGTTATAGATAATTTGAGGAAATTCACAGCTGAAGGTGCATCTTTGCAAGCAAAAGCATTTTCAATGACAGTTTCACGCTTCTTTTGGCCGAGTTCTGAAAAGAAGCCTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCTGCCCTGAGTGCCACCAAAAGTGCTATAAAAGTTTTAAGTGGCCTATCTGCCGTAAGGAGTGGAGAGGGAATTCTTCCAAGCATTGCAACATATGTCATGTATTTGGAGGAAAGTTTACATGGTTTAATAGTTGGGCCTTTTCTGAATGGAAACTACAGAAAACAATGGCGTAAACGAGTTGAACAGGCTAGAACATTTAAAGCTATAAAGCCTCTTTTGCTTGAACTTGAGGAAAATATTCGCATAATATCTTTTACCGGCGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTATTATTCAAGGTGCTGCAAATTCTGTTGGAACAATACAGACACGTGCAACAAGTGGAAGGCGCCTCAGGAAACAATCAGCTACTGATGAAGTTGCAGCTGATGTTTCTCATGAAAGAAACTTTGACTGGTGGTATGGTGGCAAATCCATGAAAATATTATTTCTAAAAGCAGTTTTGCCAAATAATGTGGTCAGGAAAGCAGCTCGCCAAGGTGGGTTGGAGAAAATTTCTGGTATTTCCTATGCTGATGGCTGTGAAATTCCTAAAAGAAGCAGACAGATGGTTTGGAGAGCTGCAGTACAAATGAGTAGGAATGCGTCACAGCTTGCACTTCAGGTCAGGTACCTTGATTTTAATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAAGGTCAGGAGACTGAATCTTCTGCATTCAGAAATGCTAATATCTGTGATAAGAAAGAATTGGGGGGAAAGCTTTTGTATGGGGTTGTTTTTAGGAACCAAAAACATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTAGAGCAAGGCCAAGAAGGAAAGGAGAAGTATTGGTTTTCTGAAGCACGTGTTCCATTATATTTGGTAAAAGAGTATGAAGCAGGTATAGGAAAAATGCCATCTCACCAAGAGAACTTGAAGTTGGAATCTCAGCTGCGAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTATACCTTACCTGCAAGAGAGACAACTGGGATATATTTTCATGTGCTGTGTGTCAGATGGATGTTTTAGCCGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACGTTCCCTACAAACAAGGAGGTTGAGTTCTTAACCACATGCAAGCGCTGTTATGCCAAATTGCTTGCTCAAAGAAGGACCAGTGACGAATCTCCAACCAGTCCCTTACTCTTGCAAGGACAAGAACATAGCTCTGTGACTGTTTTGAAGGGATCTAGACCTAAGTGTTATGATCAAGCCTTGAAATCTACCAGTATCAAGGATAGTTATCCTGACACGAAACAAGGCACTCCTGATTCTGCTCTGGCAGCAAAAAGCCGTCGCAGGAATTCTTCTTGGGGTATTATATGGAATAAGAAGAGTGGCGAGGATACAGGCATTGATTTTAGGCTTAAAAACATACTTCTAAAGGGCGGGTCAGGTGCACCTCAATTACAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATGTTCGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCACTTGAACTGGAAGAGTCAAAAATTTTTGAAGTGTTAGGCTTCAAATGCTGTAAGTGTCGCAGGATCAAATCTCCAGAGTGTCCTTACTCTGATAAGAAGCCCAAGATGCAGGAGGGCACTAAGAAACACCGGAGACCTTCCAAGAAGGATAATTCTAGCACAGACAATTTTGGAGTTATTCTTGAACCAAAAGAGTGTGAGCCTGCTACCCCTAACTTTCCTGTAGGAGATGATGGGTTGAGACAAGACAATGACCCTCTGCTTTACTCTCTTTCAAGTGCCAATTTAATAACAGACCCTAATGCAGAAGTGGATGTTGAGAGGAGTGCTGTCTCTGGTCTAGGGCTTCGGAAACTGCCAGTGAGGAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACTAGACTTTCGCAGGTTGAAATCTTAACACAAAATGGAACTGGTGGTCTGTCAGCTGCAGAGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTCTGCCTAGATAGTAGTCTTCTGAATGACTGTGGAAGTGAAAATTATGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAATCAGTTTGAGGGAGCTGATGGATCTGAGAACTTTTCTGGATACTTGGAAAATGTTTCCACTACAAATATGGATGGCATTCCTGAAGAATCTGGAGCTCTTGGTTTAGTTAATAAATCAGAACCTGCGGCTTATTTACCAGGCAGTGGTTATCATTGTTGCCAATGCATGCGGATGGAACCAGTTCCTGATCTCTCTTGTGAGATTTGTGGGCTTTGGATTCACAGCCAATGTTCACCCTGGATTGGATCACCTTCTAGGTTAGGAAGCTGGAGGTGTGGTAGTTGTCGGGAATGGCAATAG 4995 0.4242 MEAPVIRSRGRPRKRRKEDENGTDGGRLVPDLKRQAVGTRRPIELVGRYIIKEFKGSGVYLGKVVYYECGLYRVNYEDGDYEDLDSSEIRGMLLNDCDLDDELTKRRNELDQLVLKYSAKKTDGTGSSSADLNKDVTGLEAPASSELPGGLLIEHDEVDVEEDAHSSSDERDSTSDAEIPSLPPPLQLPPSSGTIGVPEPYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRALRRHLEALSSEGSEHASKCLRCNDWGLIDALTWPVFVIQYLAIYGYTRGPGWKGFYEETFNGEYYLLPVSRKLTILQILCDDVLESEEMKTEMGIREELEVGMEYDAQDTLPEENWPRFHPRNAKNACKDKEATKFVLESNAVKPLGNSLLDFRDTRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDLYGQLFMGTCDHLLVLTVNSELCLRYYNQNDILKVLQLLYASVDHRPLYYGICMAVLHYWNIPESFLHVSVGSGTDANNSSTEEDAKSSSLSTTPLGEKEYTAIKSVKTEYPATSGIVSHGDYMVRSNSLVTTTREACAFESSNDIRTREYFTMNTMFHKETRMEPVISDGPGGHQRSHFDMTNSHGHASDKQLPFAPSLQFKEGNQASSGKVEHNSTKDFSYMGFSFKPQSYVNHYMHGDFAASAAAKLAILSSEDSRSEGHVIDNLRKFTAEGASLQAKAFSMTVSRFFWPSSEKKPVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSAVRSGEGILPSIATYVMYLEESLHGLIVGPFLNGNYRKQWRKRVEQARTFKAIKPLLLELEENIRIISFTGDWVKLMDDWLVESSIIQGAANSVGTIQTRATSGRRLRKQSATDEVAADVSHERNFDWWYGGKSMKILFLKAVLPNNVVRKAARQGGLEKISGISYADGCEIPKRSRQMVWRAAVQMSRNASQLALQVRYLDFNLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKELGGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEAGIGKMPSHQENLKLESQLRRRRLKAACKDIFLYLTCKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSISSTFPTNKEVEFLTTCKRCYAKLLAQRRTSDESPTSPLLLQGQEHSSVTVLKGSRPKCYDQALKSTSIKDSYPDTKQGTPDSALAAKSRRRNSSWGIIWNKKSGEDTGIDFRLKNILLKGGSGAPQLQPVCHLCRKPYRSDLMYVRCETCKNWYHADALELEESKIFEVLGFKCCKCRRIKSPECPYSDKKPKMQEGTKKHRRPSKKDNSSTDNFGVILEPKECEPATPNFPVGDDGLRQDNDPLLYSLSSANLITDPNAEVDVERSAVSGLGLRKLPVRRHVKHEGDGDESFGTRLSQVEILTQNGTGGLSAAEKASSPVEYDPAVCLDSSLLNDCGSENYEFMDFEPHTYFSVTELLQPDDNQFEGADGSENFSGYLENVSTTNMDGIPEESGALGLVNKSEPAAYLPGSGYHCCQCMRMEPVPDLSCEICGLWIHSQCSPWIGSPSRLGSWRCGSCREWQ 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00079 1664 CDD PHD_SF 1331 1378 - -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 159 176 - -
Pral4065g00079 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 470 IPR013083 -
Pral4065g00079 1664 Pfam DDT domain 202 256 IPR018501 -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 655 681 - -
Pral4065g00079 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1321 1396 IPR013083 -
Pral4065g00079 1664 SUPERFAMILY FYVE/PHD zinc finger 1606 1661 IPR011011 -
Pral4065g00079 1664 ProSiteProfiles Zinc finger PHD-type profile. 420 467 IPR019787 -
Pral4065g00079 1664 PANTHER PHD FINGER FAMILY PROTEIN 41 1427 - -
Pral4065g00079 1664 SMART testlast3 199 259 IPR018501 -
Pral4065g00079 1664 SMART PHD_3 1616 1661 IPR001965 -
Pral4065g00079 1664 SMART PHD_3 1172 1221 IPR001965 -
Pral4065g00079 1664 SMART PHD_3 1331 1379 IPR001965 -
Pral4065g00079 1664 SMART PHD_3 422 465 IPR001965 -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 13 27 - -
Pral4065g00079 1664 CDD PHD2_CHD_II 423 464 - -
Pral4065g00079 1664 SUPERFAMILY FYVE/PHD zinc finger 393 466 IPR011011 -
Pral4065g00079 1664 CDD PHD_SF 1616 1660 - -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 1 27 - -
Pral4065g00079 1664 SUPERFAMILY FYVE/PHD zinc finger 1328 1384 IPR011011 -
Pral4065g00079 1664 Pfam PHD-finger 423 465 IPR019787 -
Pral4065g00079 1664 ProSitePatterns Zinc finger PHD-type signature. 423 464 IPR019786 -
Pral4065g00079 1664 ProSiteProfiles DDT domain profile. 199 259 IPR018501 -
Pral4065g00079 1664 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 313 352 IPR028942 -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 159 192 - -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 1389 1410 - -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 1389 1415 - -
Pral4065g00079 1664 MobiDBLite consensus disorder prediction 561 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00079 Pral-Chr4065 363890 371737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00079 289 551 EF-hand Containing Proteins AT5G22760 48.708 1.84e-70 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pral4065g00079 DDT 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00079 - - lang:109351702 1958.34